BLASTP 2.0.10 [Aug-26-1999]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|132349|sp|P15394|REPA_AGRTU REPLICATING PROTEIN.
         (250 letters)

Database: Non-redundant SwissProt sequences
           82,258 sequences; 29,652,561 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P15394|REPA_AGRTU  REPLICATING PROTEIN                         514  e-146
sp|P19922|HYIN_BRAJA  INDOLEACETAMIDE HYDROLASE (IAH) (INDOL...    34  0.29
sp|P06422|VE2_HPV08  REGULATORY PROTEIN E2                         32  0.86
sp|Q05152|CCAB_RABIT  VOLTAGE-DEPENDENT N-TYPE CALCIUM CHANN...    32  1.5
sp|P02256|H1_PARAN  HISTONE H1, GONADAL                            31  2.5
sp|P51592|HYDP_DROME  HYPERPLASTIC DISCS PROTEIN (HYD PROTEIN)     31  3.3
sp|P08392|ICP4_HSV11  TRANS-ACTING TRANSCRIPTIONAL PROTEIN I...    31  3.3
sp|P33438|GLT_DROME  GLUTACTIN PRECURSOR                           31  3.3
sp|P55268|LMB2_HUMAN  LAMININ BETA-2 CHAIN PRECURSOR (S-LAMI...    30  4.3
sp|P39713|YAG1_YEAST  HYPOTHETICAL ZINC-TYPE ALCOHOL DEHYDRO...    30  4.3
sp|Q24704|H1_DROVI  HISTONE H1                                     29  7.5
sp|Q59567|TOP1_MYCTU  DNA TOPOISOMERASE I (OMEGA-PROTEIN) (R...    29  9.8
sp|Q61085|RHOP_MOUSE  GTP-RHO BINDING PROTEIN 1 (RHOPHILIN)        29  9.8
sp|P46466|PRS4_ORYSA  26S PROTEASE REGULATORY SUBUNIT 4 HOMO...    29  9.8
sp|Q01989|MYS9_DROME  MYOSIN HEAVY CHAIN 95F (95F MHC)             29  9.8

blast_tmp 1    MFQQIGAVQAKSGTDEPAHPCEKFPPERKCEAVFWKPLPRHEAREILLAARKYELAMKQP 60
P15394    1    MFQQIGAVQAKSGTDEPAHPCEKFPPERKCEAVFWKPLPRHEAREILLAARKYELAMKQP 60
P39713    228                                                       ELAEKMG 234

blast_tmp 61   GKRTGPLGHVALEVLDYLTNLVDFGNGRLDPSISTIMEKIGRAESCMSALYPNRQRGRRP 120
P15394    61   GKRTGPLGHVALEVLDYLTNLVDFGNGRLDPSISTIMEKIGRAESCMSALYPNRQRGRRP 120
Q05152    822                                                     PGRDAPRGP 830
P08392    59                                                        RRDGRAP 65
P33438    644                                       EYVRAQEARQQEFIREREQRRRE 666
P55268    1671                                       KLKRAGNSLAASTAEETAGSAQ 1692
P39713    235  ARVYDPTAHAAKESIDYLRSIADGGDG                                  261
Q59567    842                                                       KRRGRQS 848
P46466    19                                                            RKP 21

blast_tmp 121  AGAADKQRLPLEPAGARPRALLGKYVRK------AA---PL---PDDAAQAR-------- 160
P15394    121  AGAADKQRLPLEPAGARPRALLGKYVRK------AA---PL---PDDAAQAR-------- 160
P06422    258                                           ---PQKEQRRS-------- 265
Q05152    831  PGGKSRPDGSEAPEGADPPRRHHRHRDK------DK---AP---ATVPSAGE-------- 870
P02256    147  AAAKRKAALAKKKAAAAKRKAAAKAKKA------KK---PK---KKAAKKAK-------- 186
P08392    66   AAGTDAGEDAGDAVSPRQLALLASMVEE------AVRTIPT---PDPAASPP-------- 108
P33438    667  QQLRDQQRYPQQ----EPREQQDERIRQ------QR---EQ---EERLRQQR-------- 702
P55268    1693 GRAQEAEQLLRGPLGDQYQTVKALAERK------AQ---GVLAAQARAEQLR-------- 1735
Q24704    124                 AKPKA--SAVEKK------TK---KV---NASAARAT-------- 146
Q59567    849  ASAPPLRELGTDPASGKPMVI--KDGRF------GP---YV---TDGETNAS-------- 886
P46466    22   GGDGDKKDRKFEPSAAPSR--VGRKQRKQKGPEAAA---RL---PNVAPLSKCRLRLLKL 73
Q01989    936                             R------AA---KE---AEEQRQRE-------- 948

blast_tmp 161  Q----ERHDTIKAHMDS---LSPADRLR----ET--VEDRTRAEQLAG-YVE-RAAQNR- 204
P15394    161  Q----ERHDTIKAHMDS---LSPADRLR----ET--VEDRTRAEQLAG-YVE-RAAQNR- 204
P19922    12    ----QRRDLRGRDRRS---ASRTDARR----QS--AAERGCRRSQRG-SAE-GCACGR- 54
P06422    266  R----SRHRT-RSRSRS---LSRVRAVG----ST--TVSRSRSSSLTK-AVR-PRSRSR- 308
Q05152    871  Q----DRAEALRAEGGE---LGPREERG----RP----RRSRSKEAPG-APEVRSDRGRG 914
P02256    187  K----PAKKSPKKAKKP---AKKSPKKK----KA--KRSPKKAKKAAG-KRK-PAAKKA- 230
P51592    1967  ----DKQDSISGRINN---LSPMTESY----DT--DDELANLEEFNA-DVQ-MSASSM- 2009
P08392    109  RTPAFRADDDDGDEYDD---AADAAGDR----AP--ARGREREAPLRGAYPD-PTDRLS- 157
P33438    703  E----QE-----------------ERLR----QQRELEERIRQQQERE-QYE-REQQER- 734
P55268    1736 D----EARDLLQAAQDK---LQRLQELE----GT--YEENERA                  1765
Q24704    147  K----SKSSTSTTKKAA---GAADKKLS----KS--AAAKKNVEKKKA-DKE-KAKDAK- 190
Q59567    887  L----RKGDDVASITD--------ERAA----EL--LADRRARGPAKR-PAR-KAARKV- 925
Q61085    584                                                            R- 584
P46466    74   E----RVKDYLLMEEEF---VAAQERLRPTEDKT--EEDRSKVDDLRG             112
Q01989    949  E----IENKRLKAEMETRRKAAEAQRLR----QE--EEDRRAALALQE-QLE-KEAKDD- 995

blast_tmp 205  --PSGPRKAARRRQQSRCSFTTPNRPRRTLPS------SHPQKFG---GTKGRKAFE 250
P15394    205  --PSGPRKAARRRQQSRCSFTTPNRPRRTLPS------SHPQKFG---GTKGRKAFE 250
P19922    55   --QTGPRAA-----RSACCTACPSRSRRMSTT------EGRPNFN---GVPANKDF  94
P06422    309  --SRGRATATSRRRAGRGS---PRRRRSTSRSPSTNTFKRSQRGG---GRRGR     353
Q05152    915  PCPEGGRRHHRRGSPEEAAEREPRRHRAHRHG------PDPGKEGPASGTRGER    962
P02256    231  --RRSPRKAGKRRSPKK                                         245
P51592    2010 --PSGSQGTRRH------AFFARSESTLTLGC------SAPEGF              2039
P08392    158  --PRPPAQPPRRRRHGR                                         172
P33438    735  --EQREREELERQQRER                                         749
Q24704    191  --KTGTIKAKPTTAKAKSSATKPKTPKPKTTS------AKPKK               225
Q59567    926  --PA--KKAAKR                                              933
Q61085    585  --GTGPRRAALLWNQRECGFETP-MPTRTRP                           612
Q01989    996  --AKYRQQLEQERRDHELALRLANESNGQVED------SPP                 1028


  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 18, 1999  8:26 PM
  Number of letters in database: 29,652,561
  Number of sequences in database:  82,258
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14679054
Number of Sequences: 82258
Number of extensions: 599117
Number of successful extensions: 1508
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1504
Number of HSP's gapped (non-prelim): 15
length of query: 250
length of database: 29,652,561
effective HSP length: 51
effective length of query: 199
effective length of database: 25,457,403
effective search space: 5066023197
effective search space used: 5066023197
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 63 (29.0 bits)