Score E
Sequences producing significant alignments: (bits) Value N
gb|G26621|G26621 human STS STS_D12006. >gi|1396339|gb|G... 398 e-111 1
gb|G25784|G25784 human STS EST47998. 302 2e-82 1
gb|G41148|G41148 Z7324 Zebrafish AB Danio rerio STS gen... 31 1.1 1
emb|Z53521|HSB316XA9 H.sapiens (D22S1166) DNA segment c... 30 1.5 1
gb|G42865.1|G42865 Xq3845 KWOK Homo sapiens STS genomic... 30 2.1 1
gb|G49246.1|G49246 stbK116F5_30376 chromosome 22 genomi... 29 2.9 1
gb|G53947.1|G53947 SHGC-85304 Human Homo sapiens STS ge... 29 5.5 1
gb|G55375.1|G55375 SHGC-100697 Human Homo sapiens STS g... 29 5.5 1
gb|G33174|G33174 human STS SHGC-6097 clone pG-2470 28 7.5 1
gb|L77996|HUMSWX945 Human chromosome X STS sWXD945, sin... 28 7.5 1
dbj|AU046883.1|AU046883 Rattus norvegicus, OTSUKA clone... 28 7.5 1
gb|G36957|G36957 SHGC-56642 Human Homo sapiens STS cDNA 28 7.5 1
gb|G26621|G26621 human STS STS_D12006. >gi|1396339|gb|G27620|G27620 human STS
SHGC-32705.
Length = 615
Score = 367 bits (796), Expect = e-102
Identities = 200/200 (100%), Positives = 200/200 (100%)
Frame = +2 / +2
Query: 2 IRMPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLNALMQNPLTKA 181
IRMPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLNALMQNPLTKA
Sbjct: 2 IRMPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLNALMQNPLTKA 181
Query: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYEXALX* 361
HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYE AL *
Sbjct: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYEXALX* 361
Query: 362 S*NGFPKLVTHGPGXVXLXLXGLSSFQEFXSTVANPWGX*XXXXXXXXXFXXGXRXXXLX 541
S*NGFPKLVTHGPG V L L GLSSFQEF STVANPWG * F G R L
Sbjct: 362 S*NGFPKLVTHGPGXVXLXLXGLSSFQEFXSTVANPWGX*XXXXXXXXXFXXGXRXXXLX 541
Query: 542 XXXGGCXXVXXVXXXWXXXF 601
GGC V V W F
Sbjct: 542 XXXGGCXXVXXVXXXWXXXF 601
Score = 340 bits (736), Expect = 9e-94
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3 / +3
Query: 3 SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR 182
SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR
Sbjct: 3 SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR 182
Query: 183 IGYFKPALFFM*PVLPHLLSSF*PLLNFLLYSHCSGGQIT*VLQILAGKIYSIMXQHSXN 362
IGYFKPALFFM*PVLPHLLSSF*PLLNFLLYSHCSGGQIT*VLQILAGKIYSIM QHS N
Sbjct: 183 IGYFKPALFFM*PVLPHLLSSF*PLLNFLLYSHCSGGQIT*VLQILAGKIYSIMXQHSXN 362
Query: 363 PKMDFQSWLHMALXXSY*XXXGFLXFRSXGQRWQIXGVXXWXGXLXXXXFXGAXGGXGXX 542
PKMDFQSWLHMAL SY* GFL FRS GQRWQI GV W G L F GA GG G
Sbjct: 363 PKMDFQSWLHMALXXSY*XXXGFLXFRSXGQRWQIXGVXXWXGXLXXXXFXGAXGGXGXX 542
Query: 543 SXXVGAXGXXXFXXXGXXXXXXXW 614
S VGA G F G W
Sbjct: 543 SXXVGAXGXXXFXXXGXXXXXXXW 614
Score = 350 bits (759), Expect = 6e-97
Identities = 195/205 (95%), Positives = 195/205 (95%)
Frame = +1 / +1
Query: 1 DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS 180
DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS
Sbjct: 1 DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS 180
Query: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*XSTXV 360
A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL* ST V
Sbjct: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*XSTXV 360
Query: 361 ILKWISKAGYTWPWXXXIXFXXAFFXXXXXXXXXXXXXXLXGXVX*XXXXSXGPXXXXVX 540
ILKWISKAGYTWPW I F AFF L G V * S GP V
Sbjct: 361 ILKWISKAGYTWPWXXXIXFXXAFFXSGVXVNGGKSXGXLXGXVX*XXXXSXGPXXXXVX 540
Query: 541 XPXGWVXXGXFXFXXXXXXFXXXLG 615
P GWV G F F F LG
Sbjct: 541 XPXGWVXXGXFXFXXXXXXFXXXLG 615
Score = 398 bits (864), Expect = e-111
Identities = 205/205 (100%), Positives = 205/205 (100%)
Frame = -1 / -1
Query: 615 PKXXXKXXXXXXKTKXTXXHPPXWXXNXXXLWPXXXXXXLXNXXX*XPXGFATVDXNS*X 436
PK K KTK T HPP W N LWP L N * P GFATVD NS*
Sbjct: 615 PKXXXKXXXXXXKTKXTXXHPPXWXXNXXXLWPXXXXXXLXNXXX*XPXGFATVDXNS*X 436
Query: 435 EESPXKXNXTXPGPCVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNNGCKGEN*A 256
EESP K N T PGPCVTSFGNPF*DY SA S*CCIFFLPGFGVPRLFVHQNNGCKGEN*A
Sbjct: 435 EESPXKXNXTXPGPCVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNNGCKGEN*A 256
Query: 255 VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*E 76
VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*E
Sbjct: 255 VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*E 76
Query: 75 LCIHSHFSCQSGQNEESHEWRGILI 1
LCIHSHFSCQSGQNEESHEWRGILI
Sbjct: 75 LCIHSHFSCQSGQNEESHEWRGILI 1
Score = 390 bits (846), Expect = e-109
Identities = 196/196 (100%), Positives = 196/196 (100%)
Frame = -3 / -3
Query: 589 PXXXNXXNPXAPTXXXX*PXPPXAPXKXXXXXXPXXLXTPXICHR*PKLLKXRKPX*XQX 410
P N NP APT *P PP AP K P L TP ICHR*PKLLK RKP * Q
Sbjct: 589 PXXXNXXNPXAPTXXXX*PXPPXAPXKXXXXXXPXXLXTPXICHR*PKLLKXRKPX*XQX 410
Query: 409 DXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VICPPEQWL*RRKLSSGQKLLRRC 230
D RAMCNQLWKSILGL EC FIMLYIFPARIWST*VICPPEQWL*RRKLSSGQKLLRRC
Sbjct: 409 DXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VICPPEQWL*RRKLSSGQKLLRRC 230
Query: 229 GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRALHTFPLFL 50
GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRALHTFPLFL
Sbjct: 229 GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRALHTFPLFL 50
Query: 49 SKWTK*RVS*VEGHSD 2
SKWTK*RVS*VEGHSD
Sbjct: 49 SKWTK*RVS*VEGHSD 2
Score = 281 bits (608), Expect = 4e-76
Identities = 122/122 (100%), Positives = 122/122 (100%)
Frame = -2 / -2
Query: 368 FRIT*VLXHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NRLHKKQCWFEI 189
FRIT*VL HNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NRLHKKQCWFEI
Sbjct: 368 FRIT*VLXHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NRLHKKQCWFEI 189
Query: 188 TYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVDKMKSLMSGGA 9
TYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVDKMKSLMSGGA
Sbjct: 188 TYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVDKMKSLMSGGA 9
Query: 8 F* 3
F*
Sbjct: 8 F* 3
gb|G25784|G25784 human STS EST47998.
Length = 617
Score = 273 bits (590), Expect = 1e-73
Identities = 121/133 (90%), Positives = 121/133 (90%)
Frame = +1 / +1
Query: 1 DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS 180
DQ APPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTK NAKSLDKS
Sbjct: 1 DQXAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKXXNAKSLDKS 180
Query: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*XSTXV 360
A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL* ST
Sbjct: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*NSTQ* 360
Query: 361 ILKWISKAGYTWP 399
SKAGYT P
Sbjct: 361 S*NGFSKAGYTXP 399
Score = 289 bits (626), Expect = 1e-78
Identities = 129/158 (81%), Positives = 131/158 (82%)
Frame = +2 / +2
Query: 2 IRMPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLNALMQNPLTKA 181
IR PLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGL LMQNPLTKA
Sbjct: 2 IRXPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLXPLMQNPLTKA 181
Query: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYEXALX* 361
HRLFQTSIVFYVTCFTASSQQLLTTAQF PLQPLFWWTNNLGTPNPGRKNIQHYE AL
Sbjct: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFFPLQPLFWWTNNLGTPNPGRKNIQHYETALSN 361
Query: 362 S*NGFPKLVTHGPGXVXLXLXGLSSFQEFXSTVANPWG 475
FPKLVTH + +Q F ST ANPWG
Sbjct: 362 PKMDFPKLVTHXLQSLI*I*KAFLIYQGFRSTXANPWG 475
Score = 248 bits (535), Expect = 5e-66
Identities = 128/157 (81%), Positives = 129/157 (81%)
Frame = +3 / +3
Query: 3 SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR 182
S CPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD* *CKIP*QKR
Sbjct: 3 SXCPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*XX*CKIP*QKR 182
Query: 183 IGYFKPALFFM*PVLPHLLSSF*PLLNFLLYSHCSGGQIT*VLQILAGKIYSIMXQHSXN 362
IGYFKPALFFM*PVLPHLLSSF*PLLNF LYSHCSGGQIT*VLQILAGKIYSIM QHS
Sbjct: 183 IGYFKPALFFM*PVLPHLLSSF*PLLNFFLYSHCSGGQIT*VLQILAGKIYSIMKQHSVI 362
Query: 363 PKMDFQSWLHMALXXSY*XXXGFLXFRSXGQRWQIXG 473
K FQSWLHM + F R GQR Q G
Sbjct: 363 LKWIFQSWLHMXCKVLFKFKRPFSFTRGLGQRXQTPG 473
Score = 302 bits (653), Expect = 2e-82
Identities = 128/157 (81%), Positives = 132/157 (83%)
Frame = -3 / -2
Query: 472 PXICHR*PKLLKXRKPX*XQXDXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VIC 293
P +C R*PK L K + MCNQLWK + EC FIMLYIFPARIWST*VIC
Sbjct: 472 PGVCXR*PKPLVNEKGLLNLNKTLQXMCNQLWKIHFRITECCFIMLYIFPARIWST*VIC 293
Query: 292 PPEQWL*RRKLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWL 113
PPEQWL*R+KLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH* *SKSGPIQRMWL
Sbjct: 292 PPEQWL*RKKLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*XX*SKSGPIQRMWL 113
Query: 112 KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGHSD 2
KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEG SD
Sbjct: 112 KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGXSD 2
Score = 276 bits (598), Expect = 1e-74
Identities = 122/130 (93%), Positives = 122/130 (93%)
Frame = -2 / -1
Query: 398 GHV*PALEIHFRIT*VLXHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NR 219
GHV*PALE F *VL HNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NR
Sbjct: 398 GHV*PALENPF*DY*VLFHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NR 219
Query: 218 LHKKQCWFEITYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVD 39
LHKKQCWFEITYALLSRDFAL LVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVD
Sbjct: 218 LHKKQCWFEITYALLSRDFALXXLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVD 39
Query: 38 KMKSLMSGGA 9
KMKSLMSGGA
Sbjct: 38 KMKSLMSGGA 9
Score = 290 bits (628), Expect = 7e-79
Identities = 119/131 (90%), Positives = 120/131 (90%)
Frame = -1 / -3
Query: 393 CVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNNGCKGEN*AVVRSC*EDAVKQVT 214
CVTSFG SA S*CCIFFLPGFGVPRLFVHQNNGCKG+N*AVVRSC*EDAVKQVT
Sbjct: 393 CVTSFGKSILGLLSAVS*CCIFFLPGFGVPRLFVHQNNGCKGKN*AVVRSC*EDAVKQVT 214
Query: 213 *KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*ELCIHSHFSCQSGQN 34
*KTMLV*NNLCAFVKGFCI FSPSQGQFRGCG*RHRFGLFCFF*ELCIHSHFSCQSGQN
Sbjct: 213 *KTMLV*NNLCAFVKGFCIXGFSPSQGQFRGCG*RHRFGLFCFF*ELCIHSHFSCQSGQN 34
Query: 33 EESHEWRGILI 1
EESHEWRG LI
Sbjct: 33 EESHEWRGXLI 1
gb|G41148|G41148 Z7324 Zebrafish AB Danio rerio STS genomic
Length = 351
Score = 30.8 bits (61), Expect = 1.1
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = +1 / +2
Query: 211 LCNLFYRIFSAASDHCSIFSFTAIVLV 291
L NL +R+F++ DHCS+ F V++
Sbjct: 2 LTNLIFRLFTSK*DHCSLKQFNNKVVI 82
emb|Z53521|HSB316XA9 H.sapiens (D22S1166) DNA segment containing (CA) repeat; clone
AFMb316xa9; single read, sequence tagged site [Homo
sapiens]
Length = 345
Score = 30.4 bits (60), Expect = 1.5
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -3 / +1
Query: 316 IWST*VICPPEQWL*RRKL 260
+W T +CPP W *RR+L
Sbjct: 226 LWGTAPLCPPVPWA*RRQL 282
gb|G42865.1|G42865 Xq3845 KWOK Homo sapiens STS genomic, sequence tagged site
Length = 1200
Score = 29.9 bits (59), Expect = 2.1
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = -3 / -2
Query: 106 PFWPFLFLLRALHTFPLFLSKWTK 35
P WP + LL +H+FP + W K
Sbjct: 716 PEWPSINLLPGMHSFPRVIPCWEK 645
gb|G49246.1|G49246 stbK116F5_30376 chromosome 22 genomic clone Homo sapiens STS
genomic clone 116F5, sequence tagged site
Length = 375
Score = 29.5 bits (58), Expect = 2.9
Identities = 15/34 (44%), Positives = 17/34 (49%)
Frame = -3 / -2
Query: 106 PFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGHS 5
P W FLLR LHT P K+ V+ EG S
Sbjct: 176 PGWTLRFLLRGLHTPPKAAEKFPSQGVAEPEGFS 75
gb|G53947.1|G53947 SHGC-85304 Human Homo sapiens STS genomic, sequence tagged site
Length = 444
Score = 28.6 bits (56), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = +1 / -2
Query: 202 HCFLCNLFYRIFSAASDHCSIFSF 273
HC L ++F RIF + S+F+F
Sbjct: 443 HCHLSSVFCRIFFTLEESLSLFAF 372
gb|G55375.1|G55375 SHGC-100697 Human Homo sapiens STS genomic, sequence tagged site
Length = 460
Score = 28.6 bits (56), Expect = 5.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3 / +1
Query: 15 STHETLHFVHFDRKSGNVCRALKRNKKG 98
+TH F+H +K N+C + N++G
Sbjct: 82 TTHSMTVFLHVKKKLSNICIYMPENREG 165
gb|G33174|G33174 human STS SHGC-6097 clone pG-2470
Length = 299
Score = 28.1 bits (55), Expect = 7.5
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = +1 / +2
Query: 175 KSA*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVL 288
+SA +I HC + +FS ASD S T ++L
Sbjct: 119 QSAWIIGMSHCAWAVIHCLLFSTASDEKSAVDLTGVLL 232
gb|L77996|HUMSWX945 Human chromosome X STS sWXD945, single read.
Length = 196
Score = 28.1 bits (55), Expect = 7.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +3 / -2
Query: 24 ETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHI 122
E +H+V F + G + + ++ ++ QN SH+
Sbjct: 141 EKIHYVLF*KNCGKIMTS*RQRQENQNNLLSHV 43
dbj|AU046883.1|AU046883 Rattus norvegicus, OTSUKA clone, 085f03, microsatellite sequence,
sequence tagged site
Length = 351
Score = 28.1 bits (55), Expect = 7.5
Identities = 8/26 (30%), Positives = 15/26 (56%)
Frame = +1 / +3
Query: 205 CFLCNLFYRIFSAASDHCSIFSFTAI 282
CF+C L +I+ A + + FT++
Sbjct: 249 CFICKLVLKIYLRAEERTQLIEFTSL 326
gb|G36957|G36957 SHGC-56642 Human Homo sapiens STS cDNA
Length = 466
Score = 28.1 bits (55), Expect = 7.5
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = -3 / -3
Query: 115 LKAPFWPFLFLLRAL 71
L PFW FLF L+AL
Sbjct: 242 LSVPFWKFLFYLQAL 198
Database: Non-redundant Database of GenBank STS Division
Posted date: Dec 28, 1999 3:49 PM
Number of letters in database: 32,906,604
Number of sequences in database: 89,526
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1st pass: 41589935, 2nd pass: 9765
Number of Sequences: 1st pass: 89526, 2nd pass: 84
Number of extensions: 1st pass: 501394, 2nd pass: 6747
Number of successful extensions: 1st pass: 14, 2nd pass: 49
Number of sequences better than 10.0: 20
length of query: 205
length of database: 10,968,868
effective HSP length: 46
effective length of query: 158
effective length of database: 6,850,672
effective search space: 1082406176
effective search space used: 1082406176
frameshift window, decay const: 50, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 52 (26.7 bits)
