Score E
Sequences producing significant alignments: (bits) Value
sp|P23832|SAMB_SALTY SAMB PROTEIN 862 0.0
sp|P18642|IMPB_SALTY IMPB PROTEIN 621 e-177
sp|P04152|UMUC_ECOLI UMUC PROTEIN 521 e-148
sp|P22494|UMUC_SALTY UMUC PROTEIN 515 e-146
sp|P14303|MUCB_SALTY MUCB PROTEIN 447 e-125
sp|P07375|MUCB_ECOLI MUCB PROTEIN 444 e-124
sp|P54560|YQJW_BACSU HYPOTHETICAL 45.9 KD PROTEIN IN GLNQ-A... 106 1e-22
sp|P54545|YQJH_BACSU HYPOTHETICAL 47.0 KD PROTEIN IN GLNQ-A... 92 1e-18
sp|Q47155|DINP_ECOLI DNA-DAMAGE-INDUCIBLE PROTEIN P 66 2e-10
sp|P75241|Y360_MYCPN HYPOTHETICAL PROTEIN MG360 HOMOLOG 57 9e-08
sp|Q49426|Y360_MYCGE HYPOTHETICAL PROTEIN MG360 42 0.002
sp|P34409|YLW6_CAEEL HYPOTHETICAL 59.1 KD PROTEIN F22B7.6 I... 34 0.42
sp|P23832|SAMB_SALTY SAMB PROTEIN
Length = 424
Score = 862 bits (2204), Expect = 0.0
Identities = 424/424 (100%), Positives = 424/424 (100%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS
Sbjct: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG
Sbjct: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ
Sbjct: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE
Sbjct: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV
Sbjct: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN
Sbjct: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA
Sbjct: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
Query: 421 AKLT 424
AKLT
Sbjct: 421 AKLT 424
sp|P18642|IMPB_SALTY IMPB PROTEIN
Length = 424
Score = 621 bits (1583), Expect = e-177
Identities = 298/423 (70%), Positives = 349/423 (82%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFALAD+NSFYASCEKVFRPDLR+ V+VLSNNDGCVI RS EAK LGI+MG PWFQ+R
Sbjct: 1 MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSPEAKALGIRMGQPWFQVRQ 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
+ + + FSSNYALY SMS RVM LE L+P VE YSIDEMF+D+RGI+ CI E FG
Sbjct: 61 MRLEKKIHVFSSNYALYHSMSQRVMAVLESLSPAVEPYSIDEMFIDLRGINHCISPEFFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
QLRE V+S TGLT+GVG+ PTKTLAKSAQWA+K+W QF GV+ALT N+ R KLL LQ
Sbjct: 121 HQLREQVKSWTGLTMGVGIAPTKTLAKSAQWATKQWPQFSGVVALTAENRNRILKLLGLQ 180
Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
PV E+WGVG R+++KLN +GI TALQLA+AN FIRKNF+V+LERTVRELNGESCISLEE
Sbjct: 181 PVGEVWGVGHRLTEKLNALGINTALQLAQANTAFIRKNFSVILERTVRELNGESCISLEE 240
Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
APP KQQIVCSRSFGER+T +AM QAV Q+AERAAEKLRGERQ+CR + FV+TSPFAV
Sbjct: 241 APPAKQQIVCSRSFGERITDKDAMHQAVVQYAERAAEKLRGERQYCRQVTTFVRTSPFAV 300
Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
EP Y N A EKL +PTQD+RDIIAAA RAL+ +W +G+RY KAG ML DFTP+G++Q
Sbjct: 301 KEPCYSNAAVEKLPLPTQDSRDIIAAACRALNHVWREGYRYMKAGVMLADFTPSGIAQPG 360
Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
LFDE+QPR+ SE+LM+ LD +N GKGK+WFAGRG APEWQMKRE+LS YTT+W DIP
Sbjct: 361 LFDEIQPRKNSEKLMKTLDELNQSGKGKVWFAGRGTAPEWQMKREMLSQCYTTKWRDIPL 420
Query: 421 AKL 423
A+L
Sbjct: 421 ARL 423
sp|P04152|UMUC_ECOLI UMUC PROTEIN
Length = 422
Score = 521 bits (1328), Expect = e-148
Identities = 265/424 (62%), Positives = 318/424 (74%), Gaps = 4/424 (0%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFAL DVN+FYASCE VFRPDL + VVVLSNNDGCVI R+AEAK LG+KMG PWF+ +
Sbjct: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
V+ FSSNY LYA MSNRVM LEEL+PRVE YSIDE F D+ G+ +C D DFG
Sbjct: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWS-QFGGVLALTLHNQKRTEKLLSL 179
R++R V T LT+GVG+ TKTLAK A A+K+W Q GGV+ L+ N +R KL+S
Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMSA 178
Query: 180 QPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLE 239
PV+++WG+GRRISKKL+ MGI T L LA + FIRK+FNVVLERTVREL GE C+ LE
Sbjct: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238
Query: 240 EAPPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFA 299
E P KQ+I+CSRSFGER+T Y +MRQA+C +A RAAEKLR E Q+CR I+ F+KTSPFA
Sbjct: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298
Query: 300 VTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQL 359
+ EPYYGN AS KLL PTQD+RDII AA R+LD IW GHRY KAG ML DF GV+QL
Sbjct: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358
Query: 360 NLFDEVQPRERSEQLMQVLDGIN-HPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADI 418
NLFD+ PR SEQLM V+D +N G+G ++FAG+GI +WQMKR +LSP YTTR +D+
Sbjct: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418
Query: 419 PAAK 422
K
Sbjct: 419 LRVK 422
sp|P22494|UMUC_SALTY UMUC PROTEIN
Length = 422
Score = 515 bits (1313), Expect = e-146
Identities = 267/424 (62%), Positives = 317/424 (73%), Gaps = 4/424 (0%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFAL DVNSFYASCE VFRPDL R VVVLSNNDGCVI SAEAK+LGI G P+F+ +
Sbjct: 1 MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEAKQLGIAPGEPYFKQKE 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
V+ FSSNY LYA MSNRVM LEE+ PRVE YSIDE F D+ G+ +C D DFG
Sbjct: 61 RFRRSGVVCFSSNYELYADMSNRVMTTLEEMVPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWS-QFGGVLALTLHNQKRTEKLLSL 179
R++R V T LT+GVG+ TKTLAK A A+K+W Q GV+ L+ N R +LL+L
Sbjct: 121 REIRATVLKRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTDGVVDLS--NIDRQRRLLAL 178
Query: 180 QPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLE 239
PVE++WGVGRRISKKLN +GI TAL L+ + IRK+FNVVLERTVREL GE C+ LE
Sbjct: 179 IPVEDVWGVGRRISKKLNALGIKTALDLSEQSTWIIRKHFNVVLERTVRELRGEPCLELE 238
Query: 240 EAPPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFA 299
E P KQ+IVCSRSFGERVT YE MRQAV +A RAAEKLRGE Q+CR I+ FVKTSPFA
Sbjct: 239 EFAPAKQEIVCSRSFGERVTDYEEMRQAVYSYAARAAEKLRGEHQYCRFISTFVKTSPFA 298
Query: 300 VTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQL 359
+ EPYYGN A+ LL PTQD+RDII AAV+ LD+IW DGHRY KAG ML DF GV+QL
Sbjct: 299 LNEPYYGNSAAVTLLTPTQDSRDIINAAVKCLDKIWRDGHRYQKAGVMLGDFFSQGVAQL 358
Query: 360 NLFDEVQPRERSEQLMQVLDGIN-HPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADI 418
NLFD+ PR S +LM+VLD +N GKG ++FAG+G++ +W MKRE+LSP YTTR++D+
Sbjct: 359 NLFDDNAPRAGSAKLMEVLDHLNAKDGKGTLYFAGQGMSQQWAMKREMLSPRYTTRYSDL 418
Query: 419 PAAK 422
K
Sbjct: 419 LRVK 422
sp|P14303|MUCB_SALTY MUCB PROTEIN
Length = 421
Score = 447 bits (1137), Expect = e-125
Identities = 239/423 (56%), Positives = 292/423 (68%), Gaps = 3/423 (0%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFAL DVN YASCE+ FRPDL +R+V VLSNNDG ++ R+ AKK G+KMG P+F++R
Sbjct: 1 MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDGNIVARNYLAKKAGLKMGDPYFKVRP 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
+ FSSNY LYASMS R +E LA VEQYSIDE+F+D +GI + + + FG
Sbjct: 61 IIERHNIAIFSSNYTLYASMSARFAAVVESLASHVEQYSIDELFVDCKGITAAMSLDAFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
RQLRE VR T L GVG+ TKTLAK A+K W GGV+AL + R +KL+S+
Sbjct: 121 RQLREEVRRHTTLVCGVGIARTKTLAKLCNHAAKTWPATGGVVALD--DGARLKKLMSIL 178
Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
PV E+WGVG R K L TMGI T L LARA+ IRK F VVLERTVREL GE+C SLEE
Sbjct: 179 PVAEVWGVGHRTEKALATMGIKTVLDLARADTRLIRKTFGVVLERTVRELRGEACFSLEE 238
Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
PP KQQIV SRSFG+RV T M+QAV A RAAEKLR ERQ+CR I+VF++TSP++V
Sbjct: 239 NPPAKQQIVVSRSFGQRVETLTDMQQAVTGFAARAAEKLRNERQYCRVISVFIRTSPYSV 298
Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
+ Y N A+EKL + TQD+R II AA AL RIW + YAKAG ML DF+ +QL+
Sbjct: 299 RDTQYANQATEKLTVATQDSRTIIQAAQAALARIWREDIAYAKAGVMLADFSGK-EAQLD 357
Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
LFD P SE LM VLDGIN GK +++FAG+GI + M+R++LSP YTT W IP
Sbjct: 358 LFDSATPSAGSEALMAVLDGINRRGKNQLFFAGQGIDNSFAMRRQMLSPDYTTDWRSIPI 417
Query: 421 AKL 423
A +
Sbjct: 418 ATI 420
sp|P07375|MUCB_ECOLI MUCB PROTEIN
Length = 420
Score = 444 bits (1129), Expect = e-124
Identities = 239/423 (56%), Positives = 293/423 (68%), Gaps = 4/423 (0%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
MFAL DVN YASCE+ FRPDL +R+V VLSNNDG ++ R+ AKK G+KMG P+F++R
Sbjct: 1 MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDGNIVARNYLAKKAGLKMGDPYFKVRP 60
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
+ FSSNY LYASMS R +E LA VEQYSIDE+F+D +GI + + + FG
Sbjct: 61 IIERHNIAIFSSNYTLYASMSARFAAVVESLASHVEQYSIDELFVDCKGITAAMSLDAFG 120
Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
RQLRE VR T L GVG+ TKTLAK A+K W GGV+AL + R +KL+S+
Sbjct: 121 RQLREEVRRHTTLVCGVGIARTKTLAKLCNHAAKTWPATGGVVALD--DGARLKKLMSIL 178
Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
PV E+WGVG R K L TMGI T L LARA+ IRK F VVLERTVREL GE+C SLEE
Sbjct: 179 PVAEVWGVGHRTEKALATMGIKTVLDLARADTRLIRKTFGVVLERTVRELRGEACFSLEE 238
Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
PP KQQIV SRSFG+RV T M+QAV A RAAEKLR ERQ+CR I+VF++TSP++V
Sbjct: 239 NPPAKQQIVVSRSFGQRVETLTDMQQAVTGFAARAAEKLRNERQYCRVISVFIRTSPYSV 298
Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
+ Y N A+EKL + TQD+R II AA +AL RIW + YAKAG ML DF+ +QL+
Sbjct: 299 RDTQYANQATEKLTVATQDSRTIIQAA-QALARIWREDIAYAKAGVMLADFSGK-EAQLD 356
Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
LFD P SE LM VLDGIN GK +++FAG+GI + M+R++LSP YTT W IP
Sbjct: 357 LFDSATPSAGSEALMAVLDGINRRGKNQLFFAGQGIDNSFAMRRQMLSPDYTTDWRSIPI 416
Query: 421 AKL 423
A +
Sbjct: 417 ATI 419
sp|P54560|YQJW_BACSU HYPOTHETICAL 45.9 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
Length = 412
Score = 106 bits (261), Expect = 1e-22
Identities = 107/393 (27%), Positives = 171/393 (43%), Gaps = 33/393 (8%)
Query: 4 LADVNSFYASCEKVFRPDLRDRSVVVLSNND---GCVIPRSAEAKKLGIKMGVPWFQLRS 60
L D+ SFYAS EK P L++R V+V + + G V+ AK+ G+ ++ +
Sbjct: 9 LVDMQSFYASVEKAENPHLKNRPVIVSGDPEKRGGVVLAACPLAKQKGVVNASRLWEAQE 68
Query: 61 AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFE-DF 119
K PE V+ Y +S ++ LEE VE YSIDE F+DI G +
Sbjct: 69 -KCPEAVV-LRPRMQRYIDVSLQITAILEEYTDLVEPYSIDEQFMDITGSQKLFGTPMEI 126
Query: 120 GRQLREHVRSGTGLTIGVGMGPTKTLAKSA--QWASKEWSQFGGVLALTLHNQKRTEKLL 177
+ ++ + G+ VG+GP K LAK A +A K + G+ LT N K L
Sbjct: 127 AKSIQGRIMREIGVYARVGIGPNKALAKIACDNFAKKNKN---GIFTLTKENMKTEMWPL 183
Query: 178 SLQPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCIS 237
PV ++GVG R+ LN MGI+T LA ++K + + NG
Sbjct: 184 ---PVGSMFGVGSRMKHHLNRMGISTIGGLAAFPLDLLKKKWGINGHVLWMTANG----- 235
Query: 238 LEEAPPPKQQIVCSRSFGERVT---TYE----AMRQAVCQHAERAAEKLRGERQFCRHIA 290
++ +P + ++ G +T YE ++ + + +E + R + ++
Sbjct: 236 IDYSPVSTSSLDGQKAIGHGMTLPRDYEHFDKEIKVVLLELSEEVCRRSRNAGVMGQTVS 295
Query: 291 VFVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLND 350
V + + F + + KL PT T+D+ A R W DG + G L+
Sbjct: 296 VSCRGADFDWPTGFNRQV---KLAEPTNSTQDVYEAVRRLFLTFW-DGKPVRRLGVNLSQ 351
Query: 351 FTPTGVSQLNLFDEVQPRERSEQLMQVLDGINH 383
+ + QLNLF Q + L V+DGI +
Sbjct: 352 LSSDDIWQLNLF---QDYAKKMSLGYVMDGIKN 381
sp|P54545|YQJH_BACSU HYPOTHETICAL 47.0 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
Length = 414
Score = 92.4 bits (226), Expect = 1e-18
Identities = 73/257 (28%), Positives = 121/257 (46%), Gaps = 17/257 (6%)
Query: 6 DVNSFYASCEKVFRPDLRDRSVVVLSN---NDGCVIPRSAEAKKLGIKMGVPWFQLRSAK 62
D+NSFYAS E + P LR + V V N G V+ S EA+ G+K +P +Q +
Sbjct: 12 DMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPVWQAKR-H 70
Query: 63 FPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFGRQ 122
PE +I N+ Y + S + L E VE SIDE ++D+ + ++
Sbjct: 71 CPE-LIVLPPNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTDTPYSSRALETAKE 129
Query: 123 LREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQPV 182
++ ++ L +G+ P K LAK A K L +T+ +++ +L PV
Sbjct: 130 IQSRLQKELLLPSSIGIAPNKFLAKMASDMKKP-------LGITILRKRQVPDILWPLPV 182
Query: 183 EEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEEAP 242
E+ GVG++ ++KL +GI T +LA A+ +++ + R + NG + AP
Sbjct: 183 GEMHGVGKKTAEKLKGLGIHTIGELAAADEHSLKRLLGINGPRLKNKANG-----IHHAP 237
Query: 243 PPKQQIVCSRSFGERVT 259
++I +S G T
Sbjct: 238 VDPERIYEFKSVGNSST 254
sp|Q47155|DINP_ECOLI DNA-DAMAGE-INDUCIBLE PROTEIN P
Length = 351
Score = 65.6 bits (157), Expect = 2e-10
Identities = 74/341 (21%), Positives = 139/341 (40%), Gaps = 41/341 (12%)
Query: 6 DVNSFYASCEKVFRPDLRDRSVVVLSNND--GCVIPRSAEAKKLGIKMGVPWFQLRSAKF 63
D++ F+A+ E P LRD + + + + G + + A+K G++ +P + K
Sbjct: 8 DMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM--ALKL 65
Query: 64 PEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDF-GRQ 122
+ + Y SN + R+E S+DE +LD+ C ++
Sbjct: 66 CPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQE 125
Query: 123 LREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQPV 182
+R+ + + LT G+ P K LAK A +K QF + L P+
Sbjct: 126 IRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQF-------VITPAEVPAFLQTLPL 178
Query: 183 EEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNF----NVVLERT----VRELNGES 234
+I GVG+ + KL MG+ T + + + + K F ++ ER+ R++N E
Sbjct: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238
Query: 235 CISLEEAPPPKQQIVCSRSFGERV---TTYEAMRQAVCQHAERAAEKLRGERQFCRHIAV 291
++ + R+ E + + EA+ + + ER K++ + R V
Sbjct: 239 L---------RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GV 288
Query: 292 FVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALD 332
+K F T +++ + P + D+IA A + D
Sbjct: 289 KLKFDDFQQT--------TQEHVWPRLNKADLIATARKTWD 321
sp|P75241|Y360_MYCPN HYPOTHETICAL PROTEIN MG360 HOMOLOG
Length = 412
Score = 56.6 bits (134), Expect = 9e-08
Identities = 76/343 (22%), Positives = 145/343 (42%), Gaps = 32/343 (9%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPR-SAEAKKLGIKMGVPWFQLR 59
+F D ++F+AS E++ P+L+++ ++V + V+ + A+ GIK G+P +
Sbjct: 19 LFFYFDFDAFFASVEEIENPELKNQPLIVGNRTSRSVVSTCNYLARSYGIKSGMP--IAK 76
Query: 60 SAKFPEPVIAFSSNYALYASMSNRVMVHL-EELAPRVEQYSIDEMFLDIRGIDSCIDFED 118
+ + I +S++ Y S ++ + E+ V SIDE F+ R + F
Sbjct: 77 ALELCPQAIFATSHFRNYRKYSAKIFAMIAEQFNLEVHTLSIDEGFVCFRDLSPRKAF-S 135
Query: 119 FGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLS 178
++++ HV I +G+ TLAK +K + GV + KR KL
Sbjct: 136 LAKRIQRHVYEQLNFHISIGISNQFTLAKIFSNQAKPF----GVKSCFSKEVKR--KLWP 189
Query: 179 LQPVEEIWGVGRRISKKLNTMGITTALQLARA-NPTFIRKNFNVVLERTVRELNGESCIS 237
L P+ E+ G+G+R LA+ + T ++ F + E ++
Sbjct: 190 L-PIVELPGIGKRQLDNAFKNNFHKIGDLAKCKDVTLFKRVFGIAWESL-------HAVA 241
Query: 238 LEEAPPPKQQIVCSRSFGERVT------TYEAMRQAVCQHAERAAEKLRGERQFCRHIAV 291
L E +Q V SRS T + ++Q + +L+ Q C+ + V
Sbjct: 242 LGETYTQSEQDVKSRSIAVSETLEYLNYSSNQLQQKLTSIFNELYARLQLSFQMCKGVVV 301
Query: 292 FVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRI 334
+K++ F V N S+ + T D + ++ + +R+
Sbjct: 302 QLKSNDFIV------NSHSQSIKKYTADYQTLLVIVKKLFNRL 338
sp|Q49426|Y360_MYCGE HYPOTHETICAL PROTEIN MG360
Length = 411
Score = 41.8 bits (96), Expect = 0.002
Identities = 73/353 (20%), Positives = 152/353 (42%), Gaps = 46/353 (13%)
Query: 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPR-SAEAKKLGIKMGVPWFQLR 59
+F D ++F+AS E++ P+L ++ ++V + V+ + A+ GI+ G+ L+
Sbjct: 19 IFLYFDFDAFFASVEELENPELVNQPLIVGNRFSRSVVSTCNYVARSYGIRSGMS--ILK 76
Query: 60 SAKFPEPVIAFSSNYALYASMSNRVMVHLEE-LAPRVEQYSIDEMFLDIRGIDSCIDFED 118
+ + I SN+ Y S R+ +E + +++ S+DE + I F
Sbjct: 77 ALELCPNAIFAHSNFRNYRKHSKRIFSVIESTFSLKIDVLSVDEGVACFQNISFKKAFL- 135
Query: 119 FGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLS 178
++++ V + I +G+ +AK +K + G+ + ++ + K+ KL
Sbjct: 136 IAKKIKNFVFQNLRIKISIGISDHFLIAKIFSNQAKPF----GIKSCSVKDIKK--KLWP 189
Query: 179 LQPVEEIWGVGRR----ISK----KLNTMGITTALQLARANPTFIRKNFNVVLERTVREL 230
L P+ EI G+G + + K K+N + + + + ++K F E
Sbjct: 190 L-PITEIPGIGEKHIDLVFKNNFYKINDLAVC-------EDASLLKKVFGNFWESL---- 237
Query: 231 NGESCISLEEAPPPKQQIVCSRSFGERVT------TYEAMRQAVCQHAERAAEKLRGERQ 284
+SL + V SRSF T + + + + Q ++ +L+ Q
Sbjct: 238 ---KAVSLGKWYTDNNNQVKSRSFAVSETLEDLNYSNNQLNKKLTQIFDQLFIRLQLSSQ 294
Query: 285 FCRHIAVFVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVD 337
C+ I V +K++ F V N S K+ + D R +++ R +R+ ++
Sbjct: 295 VCKGIVVQLKSNDFIV------NSHSNKMKKYSNDYRKLLSITKRLFNRLLIN 341
sp|P34409|YLW6_CAEEL HYPOTHETICAL 59.1 KD PROTEIN F22B7.6 IN CHROMOSOME III
Length = 518
Score = 34.4 bits (77), Expect = 0.42
Identities = 25/102 (24%), Positives = 47/102 (45%), Gaps = 4/102 (3%)
Query: 6 DVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRSAKFPE 65
D+++++A+ E P LR +V + + + + A++ G++ G+P F S K
Sbjct: 89 DMDAYFAAVEMRDNPALR--TVPMAVGSSAMLSTSNYLARRFGVRAGMPGFI--SNKLCP 144
Query: 66 PVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDI 107
+ NY Y +S + E V S+DE F+D+
Sbjct: 145 SLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFIDL 186
Score = 34.0 bits (76), Expect = 0.55
Identities = 26/88 (29%), Positives = 38/88 (42%), Gaps = 7/88 (7%)
Query: 117 EDFGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRT-EK 175
E+ R++R V TGLT G+ LAK +K Q+ L N K +
Sbjct: 253 EEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQY------VLENDKNAIME 306
Query: 176 LLSLQPVEEIWGVGRRISKKLNTMGITT 203
L P+ ++ G+GR +L M I T
Sbjct: 307 FLKDLPIRKVGGIGRVCEAQLKAMDIQT 334
Database: Non-redundant SwissProt sequences
Posted date: Dec 27, 1999 4:57 PM
Number of letters in database: 29,652,561
Number of sequences in database: 82,258
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24755695
Number of Sequences: 82258
Number of extensions: 1024142
Number of successful extensions: 2292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2264
Number of HSP's gapped (non-prelim): 13
length of query: 424
length of database: 29,652,561
effective HSP length: 51
effective length of query: 373
effective length of database: 25,457,403
effective search space: 9495611319
effective search space used: 9495611319
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 66 (30.1 bits)
