BLASTP 2.0.10 [Aug-26-1999]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|128372|sp|P04846|NLPA_ECOLI LIPOPROTEIN-28 PRECURSOR.
         (272 letters)

Database: Non-redundant SwissProt sequences
           82,258 sequences; 29,652,561 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

blast_tmp 24  CDQSSSDAKHIKVGVINGAEQDXXXXXXXXXXXXYGLDVELVGFSGSLLPNDATNHGELD 83
P04846    24  CDQSSSDAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELD 83
P28635    23  CGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDID 82
Q08870    24         AEKLKVGVISGPEHKVMEVAAKIAKEKYNRDVELVVFTDYATPNAALDKGDLD 76
Q08868    40            IKVGVMSGPEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLD 89
P31728    36            IKVGVMSGPEHQVAEIAAKVAKEKYGLDVQFVEFNDYALPNEAVSKGDLD 85
Q08869    40            LKVGVMTGPEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLD 89
P54594    23      SAEHESIKIGI---AESDGAINYIAQKAEEAGLDIQLIPFSDYAESDIALANKEID 76
                                       \                                  
                                       |
                                       W                                  

blast_tmp 84  ANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNX 143
P04846    84  ANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNL 143
P28635    83  ANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNL 142
Q08870    77  LNAFQHKPYLDNQIQEKGYKLVPVGNTFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNL 136
Q08868    90  ANAFQHKPYLDKDSQSKGLNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNL 150
                                  \                                       
                                  |
                                  N                                       
P31728    86  ANAMQHKPYLDEDAKAKNLNLVIVGNTFVYPLAGYSKKIKNVNELQDGAKVVVPNDPTNR 146
                                  \                                       
                                  |
                                  N                                       
Q08869    90  ANAFQTVPYLEQEVKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNT 149
P54594    77  ANAFQTISYFQSFTEKYKLNLAPLGTTYITPMGIYSKRYERIRDISRGAVVSVPDKAFDF 136

blast_tmp 144 XXXXXXXXXXXXXXXXEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIIS 203
P04846    144 GRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIIS 203
P28635    143 GRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVIN 202
Q08870    137 ARALILLEKQDLIKLRADAGLKATSVDIIENPRKLVIQEIEAPLLPRTLDD--VAFSIIN 194
Q08868    151 ARALILLEKQGLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAAKALDD--VDLAVVN 208
P31728    147 GRALILLEKQGLIKLKDANNLLSTVLDIVENPKKLNITEVDTSVAARALDD--VDLAVVN 204
Q08869    150 ARALLLLQAHGLLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDD--VELAVIN 207
P54594    137 GRALTVLQEAGLLTLKNGFNGTGSVDMIKDNPRHLKLKAVRQQDAV-----SGADVFVMK 191

blast_tmp 204 TTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETI 263
P04846    204 TTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETI 263
P28635    203 TTYASQIGLTPAKDGIFVEDKESPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKV 262
Q08870    195 TTYAGQNGLTPTKDGIFVEDKDSPYVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEE 254
Q08868    209 NTYAGQVGLNTQDHGVFVESKDSPYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKH 268
P31728    205 NTYAGQVGLNAQDDGVFVEDKDSPYVNIIVSRTDNKDSKAVQDFIKSYQTEEVYQEAQKH 264
Q08869    208 NTYAGQAGLSPDKDGIIVESKDSPYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKL 267
P54594    192 PSEAKKAGLNPKKHTLKSGGMSEEEMNLIVVRAEDQDREALQTILELYQADDTAAFIEKE 252
                                  \                                       
                                  |
                                  L                                       
P51887    32    YMRQSRMSSYNYMPYYEDENSPYVYSYVPAPDTE-AEPVPEAQQSWQCPQ         82
                                                            \             
                                                            |
                                                           AS             
P42499    690        GKSLVHDLVFKESEET--VNKLLSREEDKNVEKMRTFGKEHQN----KAAFLV 737
                                                     \                    
                                                     |
                                                     T                    

blast_tmp 264 FNGGAVPGW 272
P04846    264 FNGGAVPGW 272
P28635    263 FNGGAVKGW 271
Q08870    255 FKGAMIKGW 263
Q08868    269 FKDGVVKGW 277
P31728    265 FKDGVVKGW 273
Q08869    268 FNGGVVKGW 276
P54594    253 YQGDLV    258
P42499    738 VN        739


  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 28, 1999  4:33 PM
  Number of letters in database: 29,652,561
  Number of sequences in database:  82,258
  
Lambda     K      H
   0.313    0.134    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12949026
Number of Sequences: 82258
Number of extensions: 482987
Number of successful extensions: 844
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 9
length of query: 272
length of database: 29,652,561
effective HSP length: 53
effective length of query: 219
effective length of database: 25,292,887
effective search space: 5539142253
effective search space used: 5539142253
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)