BLASTP 2.0.14 [Jun-29-2000] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= aseq (82 letters) Database: SWISS_PROT 87,404 sequences; 31,753,758 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). ... 27 6.0 DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws... 27 7.9 DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious cl... 27 7.9 DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna po... 27 7.9 DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna po... 27 7.9 DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna... 27 7.9 >YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). hypothetical myosin-like protein in ilv2-ade17 intergenic region. 5/2000 Length = 1219 Score = 27.4 bits (59), Expect = 6.0 Identities = 10/22 (45%), Positives = 16/22 (72%) Query: 52 NLIALQHIPLSPAGVIAKRPAP 73 ++ A QH+P +PA +K+PAP Sbjct: 992 SIAAAQHVPTAPASRHSKKPAP 1013 >DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws23). dna polymerase (ec 2.7.7.7) (fragment). 12/1998 Length = 556 Score = 27.0 bits (58), Expect = 7.9 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 115 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 157 >DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious clone) (whv 8). dna polymerase (ec 2.7.7.7). 12/1998 Length = 884 Score = 27.0 bits (58), Expect = 7.9 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485 >DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna polymerase (ec 2.7.7.7). 12/1998 Length = 883 Score = 27.0 bits (58), Expect = 7.9 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 442 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 484 >DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna polymerase (ec 2.7.7.7). 12/1998 Length = 884 Score = 27.0 bits (58), Expect = 7.9 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485 >DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna polymerase (ec 2.7.7.7). 12/1998 Length = 884 Score = 27.0 bits (58), Expect = 7.9 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: Sequences not found previously or not previously below threshold: YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). ... 27 5.9 DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws... 27 5.9 DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious cl... 27 5.9 DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna po... 27 5.9 DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna po... 27 5.9 DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna... 27 5.9 DPOL_HPBGS P03161 ground squirrel hepatitis virus (gshv). dn... 27 7.8 CONVERGED! >YMZ9_YEAST Q04439 saccharomyces cerevisiae (baker's yeast). hypothetical myosin-like protein in ilv2-ade17 intergenic region. 5/2000 Length = 1219 Score = 27.4 bits (59), Expect = 5.9 Identities = 10/22 (45%), Positives = 16/22 (72%) Query: 52 NLIALQHIPLSPAGVIAKRPAP 73 ++ A QH+P +PA +K+PAP Sbjct: 992 SIAAAQHVPTAPASRHSKKPAP 1013 >DPOL_WHVW6 P11292 woodchuck hepatitis virus w64 (isolate pws23). dna polymerase (ec 2.7.7.7) (fragment). 12/1998 Length = 556 Score = 27.4 bits (59), Expect = 5.9 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 115 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 157 >DPOL_WHV8I P17396 woodchuck hepatitis virus 8 (infectious clone) (whv 8). dna polymerase (ec 2.7.7.7). 12/1998 Length = 884 Score = 27.4 bits (59), Expect = 5.9 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485 >DPOL_WHV8 P06275 woodchuck hepatitis virus 8 (whv 8). dna polymerase (ec 2.7.7.7). 12/1998 Length = 883 Score = 27.4 bits (59), Expect = 5.9 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 442 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 484 >DPOL_WHV7 P12898 woodchuck hepatitis virus 7 (whv 7). dna polymerase (ec 2.7.7.7). 12/1998 Length = 884 Score = 27.4 bits (59), Expect = 5.9 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485 >DPOL_WHV59 P12899 woodchuck hepatitis virus 59 (whv 59). dna polymerase (ec 2.7.7.7). 12/1998 Length = 884 Score = 27.4 bits (59), Expect = 5.9 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 443 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPISPAAV 485 >DPOL_HPBGS P03161 ground squirrel hepatitis virus (gshv). dna polymerase (ec 2.7.7.7) (a protein). 12/1998 Length = 881 Score = 27.0 bits (58), Expect = 7.8 Identities = 17/43 (39%), Positives = 20/43 (45%), Gaps = 10/43 (23%) Query: 34 IHWPSFY--NVVTGKTLALPNL--------IALQHIPLSPAGV 66 +HWP F N+ T L NL A HIP+SPA V Sbjct: 440 VHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPVSPAAV 482 Database: /dbase/swissprot/main/release/sp Posted date: Jun 21, 2000 12:39 PM Number of letters in database: 31,411,157 Number of sequences in database: 86,593 Database: /dbase/swissprot/main/update/spu Posted date: Jul 30, 2000 11:00 PM Number of letters in database: 342,601 Number of sequences in database: 811 Lambda K H 0.318 0.132 0.422 Lambda K H 0.270 0.0464 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7377465 Number of Sequences: 87404 Number of extensions: 229017 Number of successful extensions: 569 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 567 Number of HSP's gapped (non-prelim): 13 length of query: 82 length of database: 31,753,758 effective HSP length: 44 effective length of query: 38 effective length of database: 27,907,982 effective search space: 1060503316 effective search space used: 1060503316 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 58 (27.0 bits)