BLASTN 2.1.2 [Nov-13-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 984887321-25017-7612


Database: nt
           816,659 sequences; 2,928,690,202 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs


Taxonomy reports


Query= gi|8332116|gb|BE037100.1|BE037100 MP14H09 MP
Mesembryanthemum crystallinum cDNA 5' similar to cold acclimation
protein, mRNA sequence
         (1111 letters)



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AF283004.1|AF283004  Arabidopsis thaliana cold acclimatio...    46  0.042
gb|AC006438.3|AC006438  Arabidopsis thaliana chromosome II s...    46  0.042
dbj|AB044404.1|AB044404  Arabidopsis thaliana FL3-5A3 mRNA f...    46  0.042
emb|Z99707.1|ATAP21  Arabidopsis thaliana DNA chromosome 4, ...    44  0.17
emb|AL161591.2|ATCHRIV87  Arabidopsis thaliana DNA chromosom...    44  0.17
gb|AF283006.1|AF283006  Oryza sativa cold acclimation protei...    42  0.66
emb|AL359511.16|AL359511  Human DNA sequence from clone RP1-...    42  0.66
gb|AC008529.4|AC008529  Homo sapiens chromosome 5 clone CTC-...    40  2.6
gb|AE003837.2|AE003837  Drosophila melanogaster genomic scaf...    40  2.6
gb|AF283005.1|AF283005  Arabidopsis thaliana cold acclimatio...    40  2.6
gb|AC006421.1|AC006421  Drosophila melanogaster, chromosome ...    40  2.6
gb|AF087457.1|AF087457  Mesocricetus auratus N-acetylglucosa...    40  2.6
gb|AF087456.1|AF087456  Mesocricetus auratus N-acetylglucosa...    40  2.6
gb|U65792.1|CGU65792  Cricetulus griseus mutant N-acetylgluc...    40  2.6
gb|U65791.1|CGU65791  Cricetulus griseus N-acetylglucoaminyl...    40  2.6

Alignments
>gb|AF283004.1|AF283004 Arabidopsis thaliana cold acclimation protein WCOR413-like protein
           alpha form mRNA, complete cds
          Length = 783

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                       
Query: 249 tacttgttgatattggatcgaacaaactggagaaccaacatgctcacgtcacttttagtc 308
           ||||||||| | ||||||||||| || ||||  || || |||||||| |||||| |  | 
Sbjct: 237 tacttgttggtgttggatcgaaccaattggaagacgaatatgctcacatcacttctcatt 296

                                  
Query: 309 ccttacatattcctcagtcttcc 331
           |||||||| ||| ||||||||||
Sbjct: 297 ccttacatcttcttcagtcttcc 319



>gb|AC006438.3|AC006438 Arabidopsis thaliana chromosome II section 92 of 255 of the complete
             sequence. Sequence from clones F19G14, F7H1
          Length = 87803

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                         
Query: 249   tacttgttgatattggatcgaacaaactggagaaccaacatgctcacgtcacttttagtc 308
             ||||||||| | ||||||||||| || ||||  || || |||||||| |||||| |  | 
Sbjct: 85104 tacttgttggtgttggatcgaaccaattggaagacgaatatgctcacatcacttctcatt 85163

                                    
Query: 309   ccttacatattcctcagtcttcc 331
             |||||||| ||| ||||||||||
Sbjct: 85164 ccttacatcttcttcagtcttcc 85186



>dbj|AB044404.1|AB044404 Arabidopsis thaliana FL3-5A3 mRNA for cold acclimation protein
           homolog, complete cds
          Length = 820

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                       
Query: 249 tacttgttgatattggatcgaacaaactggagaaccaacatgctcacgtcacttttagtc 308
           ||||||||| | ||||||||||| || ||||  || || |||||||| |||||| |  | 
Sbjct: 244 tacttgttggtgttggatcgaaccaattggaagacgaatatgctcacatcacttctcatt 303

                                  
Query: 309 ccttacatattcctcagtcttcc 331
           |||||||| ||| ||||||||||
Sbjct: 304 ccttacatcttcttcagtcttcc 326



>emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1
          Length = 206420

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 253   tgttgatattggatcgaacaaactggagaaccaa 286
             |||||||||||||||| || ||||||| ||||||
Sbjct: 52308 tgttgatattggatcgtaccaactggaaaaccaa 52275



>emb|AL161591.2|ATCHRIV87 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87
          Length = 196339

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 253  tgttgatattggatcgaacaaactggagaaccaa 286
            |||||||||||||||| || ||||||| ||||||
Sbjct: 9146 tgttgatattggatcgtaccaactggaaaaccaa 9179



>gb|AF283006.1|AF283006 Oryza sativa cold acclimation protein WCOR413-like protein mRNA,
           complete cds
          Length = 1057

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 256 tgatattggatcgaacaaactggagaaccaacatgct 292
           ||||||||||| | ||||||||||  |||||||||||
Sbjct: 316 tgatattggataggacaaactggaagaccaacatgct 352



>emb|AL359511.16|AL359511 Human DNA sequence from clone RP1-298M8 on chromosome 20, complete
            sequence [Homo sapiens]
          Length = 63264

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 61   agaaaatggggagagaaatga 81
            |||||||||||||||||||||
Sbjct: 9450 agaaaatggggagagaaatga 9430



>gb|AC008529.4|AC008529 Homo sapiens chromosome 5 clone CTC-475P15, complete sequence
          Length = 169557

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ggcactcatttcctcaaatg 226
             ||||||||||||||||||||
Sbjct: 33167 ggcactcatttcctcaaatg 33186



>gb|AE003837.2|AE003837 Drosophila melanogaster genomic scaffold 142000013386047 section 6 of
             52, complete sequence
          Length = 234905

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gcaacaatgaggctcatcaa 175
             ||||||||||||||||||||
Sbjct: 20459 gcaacaatgaggctcatcaa 20478



>gb|AF283005.1|AF283005 Arabidopsis thaliana cold acclimation protein WCOR413-like protein
           beta form mRNA, complete cds
          Length = 884

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 246 atttacttgttgatattggatcgaacaaactggagaaccaacatgctcacgtcact 301
           ||||||||||| || |||||||| || || |||| |||||| ||||| || |||||
Sbjct: 212 atttacttgttaattttggatcgtaccaattggaaaaccaagatgcttacatcact 267



>gb|AC006421.1|AC006421 Drosophila melanogaster, chromosome 2R, region 44C1-44C5, P1 clones
            DS08614 and DS00667, complete sequence
          Length = 100575

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  gcaacaatgaggctcatcaa 175
            ||||||||||||||||||||
Sbjct: 8902 gcaacaatgaggctcatcaa 8921



>gb|AF087457.1|AF087457 Mesocricetus auratus N-acetylglucosaminyltransferase I mutant mRNA,
           complete cds
          Length = 1344

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 462 ctggtggtggcaccagacttcttt 485
           |||| |||||||||||||||||||
Sbjct: 640 ctggaggtggcaccagacttcttt 663



>gb|AF087456.1|AF087456 Mesocricetus auratus N-acetylglucosaminyltransferase I mRNA,
           complete cds
          Length = 1344

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 462 ctggtggtggcaccagacttcttt 485
           |||| |||||||||||||||||||
Sbjct: 640 ctggaggtggcaccagacttcttt 663



>gb|U65792.1|CGU65792 Cricetulus griseus mutant N-acetylglucosaminyltransferase I mRNA,
           complete cds
          Length = 1344

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 462 ctggtggtggcaccagacttcttt 485
           |||| |||||||||||||||||||
Sbjct: 640 ctggaggtggcaccagacttcttt 663



>gb|U65791.1|CGU65791 Cricetulus griseus N-acetylglucoaminyltransferase I mRNA, complete
           cds
          Length = 1344

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 462 ctggtggtggcaccagacttcttt 485
           |||| |||||||||||||||||||
Sbjct: 640 ctggaggtggcaccagacttcttt 663




  Database: nt
    Posted date:  Mar 17, 2001  1:49 AM
  Number of letters in database: 2,928,690,202
  Number of sequences in database:  816,659
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1106713
Number of Sequences: 816659
Number of extensions: 1106713
Number of successful extensions: 5784
Number of sequences better than 10.0: 15
length of query: 1111
length of database: 2,928,690,202
effective HSP length: 21
effective length of query: 1090
effective length of database: 2,911,540,363
effective search space: 3173578995670
effective search space used: 3173578995670
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)