BLASTP 2.2.2 [Jan-08-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|29294651|ref|NP_803187.1| dicer1 [Homo sapiens] (1922 letters) Database: NC_000964 4105 sequences; 1,221,421 total letters Searching.........done Score E Sequences producing significant alignments: (bits) Value gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis... 69 3e-12 gi|16080962|ref|NP_391790.1| ATP-dependent RNA helicase [Bacillu... 48 6e-06 gi|16078650|ref|NP_389469.1| ATP-dependent DNA helicase [Bacillu... 42 3e-04 gi|16077525|ref|NP_388339.1| hypothetical protein BSU04580 [Baci... 42 3e-04 gi|16079569|ref|NP_390393.1| hypothetical protein BSU25140 [Baci... 39 0.002 gi|16077123|ref|NP_387936.1| transcription-repair coupling facto... 38 0.007 gi|16080570|ref|NP_391397.1| excinuclease ABC subunit B [Bacillu... 37 0.009 gi|16080600|ref|NP_391427.1| late competence protein [Bacillus s... 36 0.025 gi|16077810|ref|NP_388624.1| hypothetical protein BSU07430 [Baci... 35 0.042 gi|16078982|ref|NP_389803.1| hypothetical protein BSU19220 [Baci... 33 0.12 gi|16079514|ref|NP_390338.1| hypothetical protein BSU24580 [Baci... 31 0.80 gi|16079359|ref|NP_390183.1| ATP-dependent DNA helicase [Bacillu... 30 1.0 gi|16079280|ref|NP_390104.1| hypothetical protein BSU22220 [Baci... 29 2.3 gi|16081087|ref|NP_391915.1| transcriptional regulator (NtrC/Nif... 28 5.2 gi|16080045|ref|NP_390871.1| pullulanase [Bacillus subtilis subs... 27 8.8 >gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] Length = 249 Score = 68.9 bits (167), Expect = 3e-12 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 36/176 (20%) Query: 1663 ISGFENFEKKINYRFKNKAYLLQAFTHASY---HYNTITDCYQRLEFLGDAILDYLITKH 1719 + F+ F+++I+ F+N+ L QAFTH+SY H + +RLEFLGDA+L+ I++ Sbjct: 17 VEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76 Query: 1720 LYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEK 1779 L+ S G LT LR+A+V SLA + + D V + Sbjct: 77 LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF---------------GDLVLLG-KG 120 Query: 1780 NEMQGMXXXXXXXXXXXXXXXXXXVPKAMGDIFESLAGAIYMDSGMS-LETVWQVY 1834 EM G P + D+FE+ GA+Y+D G+ +E+ +VY Sbjct: 121 EEMTG----------------GRKRPALLADVFEAFIGALYLDQGLEPVESFLKVY 160 Score = 37.7 bits (86), Expect = 0.007 Identities = 20/47 (42%), Positives = 28/47 (59%) Query: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRL 1359 ERLE LGD+ L+ I+ +LF YP EG L+ +R+ V +L L Sbjct: 59 ERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSL 105 >gi|16080962|ref|NP_391790.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 479 Score = 47.8 bits (112), Expect = 6e-06 Identities = 28/82 (34%), Positives = 41/82 (49%), Gaps = 1/82 (1%) Query: 503 EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPISNYI 561 +V+ +F+ E L+AT + G+DI +LV+ +DLP E SYV GR RA Sbjct: 281 DVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA 340 Query: 562 MLADTDKIKSFEEDLKTYKAIE 583 + T K F D++ Y E Sbjct: 341 ISFVTAFEKRFLADIEEYIGFE 362 >gi|16078650|ref|NP_389469.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 682 Score = 42.4 bits (98), Expect = 3e-04 Identities = 26/98 (26%), Positives = 53/98 (53%), Gaps = 4/98 (4%) Query: 445 IIFVERRYT----AVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRK 500 + FVE+ A ++ LI+E+ K D + A N ++ GK + + Sbjct: 456 LAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDE 515 Query: 501 QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFD 538 +++V+R+F A+ +L++T++VE GV++P ++V +D Sbjct: 516 KDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYD 553 >gi|16077525|ref|NP_388339.1| hypothetical protein BSU04580 [Bacillus subtilis subsp. subtilis str. 168] Length = 511 Score = 42.0 bits (97), Expect = 3e-04 Identities = 30/94 (31%), Positives = 44/94 (45%), Gaps = 7/94 (7%) Query: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPIS 558 K+ LRKF+ +L+AT + G+DI V FD+P + SYV GR RA + Sbjct: 296 KRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKT 355 Query: 559 NYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSK 592 M T + KS +AIE+ + K + Sbjct: 356 GMAMTFITPREKSM------LRAIEQTTKRKMDR 383 >gi|16079569|ref|NP_390393.1| hypothetical protein BSU25140 [Bacillus subtilis subsp. subtilis str. 168] Length = 438 Score = 39.3 bits (90), Expect = 0.002 Identities = 25/81 (30%), Positives = 42/81 (50%), Gaps = 5/81 (6%) Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPI 557 R++++V+++ E +IAT + G+DI + V+ ++LP + YV GR ARA Sbjct: 282 RERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGS 341 Query: 558 SNYIM----LADTDKIKSFEE 574 S M L D D + E+ Sbjct: 342 SGQAMTIYELTDEDALVRLEK 362 >gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. 168] Length = 1177 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/37 (43%), Positives = 26/37 (70%) Query: 502 EEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFD 538 E V+ F E+++L++T+I+E GVDIP N ++ FD Sbjct: 874 ETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFD 910 >gi|16080570|ref|NP_391397.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str. 168] Length = 661 Score = 37.4 bits (85), Expect = 0.009 Identities = 24/69 (34%), Positives = 38/69 (54%), Gaps = 6/69 (8%) Query: 503 EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQSKGR-ARAP 556 E++R R + ++L+ +++ EG+DIP+ +LV D E RS +Q+ GR AR Sbjct: 486 EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 545 Query: 557 ISNYIMLAD 565 IM AD Sbjct: 546 EGRVIMYAD 554 >gi|16080600|ref|NP_391427.1| late competence protein [Bacillus subtilis subsp. subtilis str. 168] Length = 463 Score = 35.8 bits (81), Expect = 0.025 Identities = 16/41 (39%), Positives = 28/41 (68%) Query: 490 RNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPK 530 R + AE + ++E +++FR + +LLI T+I+E GV +PK Sbjct: 355 RTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPK 395 >gi|16077810|ref|NP_388624.1| hypothetical protein BSU07430 [Bacillus subtilis subsp. subtilis str. 168] Length = 376 Score = 35.0 bits (79), Expect = 0.042 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 495 EAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552 EA+ ++ +++ F E LL+AT I G+DI V+ D+P E YV GR Sbjct: 274 EAKKMERAKIIATFEDGEFPLLLATDIAARGLDIENLPYVIHADIPDE-DGYVHRSGR 330 >gi|16078982|ref|NP_389803.1| hypothetical protein BSU19220 [Bacillus subtilis subsp. subtilis str. 168] Length = 591 Score = 33.5 bits (75), Expect = 0.12 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 497 EFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553 + RK+++ +F E +++ATS G+D V+ +P + SY Q GRA Sbjct: 267 DVRKEQQ--ERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGRA 321 >gi|16079514|ref|NP_390338.1| hypothetical protein BSU24580 [Bacillus subtilis subsp. subtilis str. 168] Length = 557 Score = 30.8 bits (68), Expect = 0.80 Identities = 31/108 (28%), Positives = 46/108 (41%), Gaps = 22/108 (20%) Query: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEV 504 IIF E R T + L +++ G ISS G G + + M+ FR + +V Sbjct: 376 IIFTEYRATQIYLQWFLQQNG--------ISSVPFRG---GFKRGKKDWMKDLFRGKIQV 424 Query: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552 L IAT EG+++ CN ++ +DLP Q GR Sbjct: 425 L-----------IATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGR 461 >gi|16079359|ref|NP_390183.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 496 Score = 30.4 bits (67), Expect = 1.0 Identities = 14/50 (28%), Positives = 27/50 (54%) Query: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553 + ++F ++ +++ T+ GVD P V+ F LP +++Q GRA Sbjct: 271 IQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA 320 >gi|16079280|ref|NP_390104.1| hypothetical protein BSU22220 [Bacillus subtilis subsp. subtilis str. 168] Length = 749 Score = 29.3 bits (64), Expect = 2.3 Identities = 22/76 (28%), Positives = 38/76 (49%), Gaps = 2/76 (2%) Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA--RAP 556 +++ E+ R R + +++T+ +E GVDI + + V P S Q GRA R Sbjct: 331 KERREIERGLREGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHG 390 Query: 557 ISNYIMLADTDKIKSF 572 S IM+A++ I + Sbjct: 391 ESLIIMVANSTPIDQY 406 >gi|16081087|ref|NP_391915.1| transcriptional regulator (NtrC/NifA family) [Bacillus subtilis subsp. subtilis str. 168] Length = 461 Score = 28.1 bits (61), Expect = 5.2 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 20/116 (17%) Query: 491 NKQMEAEFRKQEEVLRK-------FRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEY 543 NK M+ E ++ +VL K F + + L+ ++EG I Sbjct: 37 NKMMQIEDMEKHDVLNKNLMDVFMFSKQQDSTLVQA--LQEGKTIKNVK----------- 83 Query: 544 RSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGET 599 +SY +KG+ I++ + KI+ E K +E+++R +K T T Sbjct: 84 QSYFNNKGQEITTINHTYPIVQDGKIRGAVEIAKDVTKLERLIRENMNKKGSTTYT 139 >gi|16080045|ref|NP_390871.1| pullulanase [Bacillus subtilis subsp. subtilis str. 168] Length = 718 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/31 (35%), Positives = 19/31 (60%) Query: 1533 ENCGVDTGKQSISYDLHTEQCIADKSIADCV 1563 + CG+ + + D+ +E+ +A K IADCV Sbjct: 361 DECGMPSNGTGVGNDIASERRMARKFIADCV 391 Database: NC_000964 Posted date: Jun 21, 2009 11:38 AM Number of letters in database: 1,221,421 Number of sequences in database: 4105 Lambda K H 0.319 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,155,855 Number of Sequences: 4105 Number of extensions: 166484 Number of successful extensions: 406 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 383 Number of HSP's gapped (non-prelim): 23 length of query: 1922 length of database: 1,221,421 effective HSP length: 98 effective length of query: 1824 effective length of database: 819,131 effective search space: 1494094944 effective search space used: 1494094944 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits) BLASTP 2.2.2 [Jan-08-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|155030234|ref|NP_037367.3| ribonuclease III, nuclear isoform 1 [Homo sapiens] (1374 letters) Database: NC_000964 4105 sequences; 1,221,421 total letters Searching.........done Score E Sequences producing significant alignments: (bits) Value gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis... 119 9e-28 gi|50812236|ref|NP_389601.2| polyketide synthase [Bacillus subti... 29 1.7 gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subt... 28 2.8 gi|16080582|ref|NP_391409.1| peptide chain release factor 2 [Bac... 28 3.7 gi|16079863|ref|NP_390689.1| required for assembly of the spore ... 27 6.3 gi|16077459|ref|NP_388273.1| succinate-semialdehyde dehydrogenas... 27 6.3 gi|16080133|ref|NP_390959.1| hypothetical protein BSU30810 [Baci... 27 8.2 gi|16078464|ref|NP_389283.1| hypothetical protein BSU14000 [Baci... 27 8.2 >gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] Length = 249 Score = 119 bits (299), Expect = 9e-28 Identities = 80/231 (34%), Positives = 126/231 (53%), Gaps = 9/231 (3%) Query: 1104 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGH--NQRMEFLGDSIMQLVATEY 1161 +++ EF+E I V F + +LL +AFT + H + N+R+EFLGD++++L + + Sbjct: 17 VEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76 Query: 1162 LFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVA-LRTKTLADL 1220 LF +P EG LT LR+++V + +A EL + + + R LAD+ Sbjct: 77 LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADV 136 Query: 1221 LESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPD 1280 E+FI ALY+D+ LE V +F+ V FP++ + + D KSQLQ+ ++ +GK Sbjct: 137 FEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM-DFKSQLQE---YVQRDGK--G 190 Query: 1281 IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331 YK GP+H R + V KGE +G G G S ++AE AA +AL K Sbjct: 191 SLEYKISNEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241 Score = 68.6 bits (166), Expect = 2e-12 Identities = 40/105 (38%), Positives = 55/105 (52%) Query: 965 NERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLY 1024 NERLEFLGDAV+E S L+ +P++ EG L R AIV L LA +L +L Sbjct: 58 NERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 117 Query: 1025 AHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069 G ++ +A+ FEA IGA+YL+ LE + +F Sbjct: 118 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVF 162 >gi|50812236|ref|NP_389601.2| polyketide synthase [Bacillus subtilis subsp. subtilis str. 168] Length = 4262 Score = 29.3 bits (64), Expect = 1.7 Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 8/74 (10%) Query: 1188 AKVAEELGMQEYAITNDKTKRPVALRTKTLADLLESFIAALYIDKDL-EYVHTFMNVCFF 1246 ++V+ LGM E AI T+ P+A K D +++ ++ DL E++HT + + Sbjct: 3375 SRVSRFLGMTEPAIPEPATQAPLAQENK---DEVKTLSIEKRLEHDLKEHIHTLLKI--- 3428 Query: 1247 PRLKEFILNQDWND 1260 LN++W D Sbjct: 3429 -SKDRLNLNKNWAD 3441 >gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168] Length = 821 Score = 28.5 bits (62), Expect = 2.8 Identities = 20/77 (25%), Positives = 38/77 (48%), Gaps = 14/77 (18%) Query: 787 DPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREE-------------ALQKIRQKNT 833 + +YQ L K +L+ +LAN KV + +++L + +E L+ I ++ Sbjct: 441 EEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDL 500 Query: 834 MRRE-VTVELSSQGFWK 849 + RE + V L+ G+ K Sbjct: 501 IERENIVVTLTHNGYVK 517 >gi|16080582|ref|NP_391409.1| peptide chain release factor 2 [Bacillus subtilis subsp. subtilis str. 168] Length = 366 Score = 28.1 bits (61), Expect = 3.7 Identities = 14/48 (29%), Positives = 25/48 (51%) Query: 789 QYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRR 836 Q+ S V++ HL N QT++ ++ RE A++ ++ K RR Sbjct: 251 QHVNTTDSAVRITHLPTNVVVTCQTERSQIKNRERAMKMLKAKLYQRR 298 >gi|16079863|ref|NP_390689.1| required for assembly of the spore coat (stage VI sporulation) [Bacillus subtilis subsp. subtilis str. 168] Length = 575 Score = 27.3 bits (59), Expect = 6.3 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 18/105 (17%) Query: 1274 TEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPS-IQQAEMGAAMDALEKY 1332 T+ KEP+IPLY+ F+ E + S +++ +A +A+ ++ Sbjct: 140 TQDKEPEIPLYE--------------APAAFREEELSEPPAHSVVEEPGASSAEEAVLQH 185 Query: 1333 NFPQMAHQKRFIERKYRQELKEMRWEREHQE---REPDETEDIKK 1374 P + + R+EL+ + E E E EP+ ED+K+ Sbjct: 186 EPPAEPPELFISKAGLREELETEKAESEPPESVASEPEAREDVKE 230 >gi|16077459|ref|NP_388273.1| succinate-semialdehyde dehydrogenase [Bacillus subtilis subsp. subtilis str. 168] Length = 462 Score = 27.3 bits (59), Expect = 6.3 Identities = 12/22 (54%), Positives = 16/22 (72%) Query: 1045 EALIGAVYLEGSLEEAKQLFGR 1066 E L GA Y+E EEAK+++GR Sbjct: 85 EVLYGAGYIEWFAEEAKRVYGR 106 >gi|16080133|ref|NP_390959.1| hypothetical protein BSU30810 [Bacillus subtilis subsp. subtilis str. 168] Length = 274 Score = 26.9 bits (58), Expect = 8.2 Identities = 12/29 (41%), Positives = 16/29 (54%) Query: 872 YHQCLMHLDKLIGYTFQDRCLLQLAMTHP 900 + Q +H KLIGY+ R AMT+P Sbjct: 85 FDQLKLHKVKLIGYSMGGRLAYSFAMTYP 113 >gi|16078464|ref|NP_389283.1| hypothetical protein BSU14000 [Bacillus subtilis subsp. subtilis str. 168] Length = 392 Score = 26.9 bits (58), Expect = 8.2 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Query: 953 GQDDPTPSRINHNERLEFLGDAVVEFLTSV----HLYYLFPSLEEGGLATY 999 G DD R + +RL+++ D +V V +Y+FPS++ G+ ++ Sbjct: 278 GFDDALIMREQYKKRLDYVYDRLVSMGLDVVKPSGAFYIFPSIKSFGMTSF 328 Database: NC_000964 Posted date: Jun 21, 2009 11:38 AM Number of letters in database: 1,221,421 Number of sequences in database: 4105 Lambda K H 0.321 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,679,991 Number of Sequences: 4105 Number of extensions: 104631 Number of successful extensions: 218 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 208 Number of HSP's gapped (non-prelim): 11 length of query: 1374 length of database: 1,221,421 effective HSP length: 95 effective length of query: 1279 effective length of database: 831,446 effective search space: 1063419434 effective search space used: 1063419434 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.9 bits)