BLASTX 2.2.4 [Aug-26-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1032425806-013487-3242

Query= 
         (577 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,171,253 sequences; 370,891,306 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN04997.1|  (AC105744) putative transcription initiation...   292   2e-78
ref|NP_192998.1|  (NM_117331) putative protein; protein id: ...   179   2e-44
gb|AAF30307.1|AC018907_7  (AC018907) putative RING zinc fing...    38   0.067
ref|NP_566274.1|  (NM_111489) putative RING zinc finger prot...    38   0.067
gb|AAM78102.1|  (AY125510) AT5g19080/T16G12_120 [Arabidopsis...    38   0.067
ref|NP_566356.1|  (NM_111812) expressed protein; protein id:...    38   0.087
ref|NP_197409.1|  (NM_121913) unknown protein; protein id: A...    37   0.11 
ref|NP_510817.1|  (NM_078416) F10D7.5b.p [Caenorhabditis ele...    37   0.19 
gb|AAL86506.1|AC099040_10  (AC099040) putative hydroxyprolin...    37   0.19 
gb|AAM81093.1|U40945_8  (U40945) Hypothetical protein F10D7....    37   0.19 
ref|NP_510818.1|  (NM_078417) D. melanogaster finger protein...    37   0.19 
gb|AAM81090.1|U40945_5  (U40945) Hypothetical protein F10D7....    37   0.19 
pir||T16028  hypothetical protein F10D7.5 - Caenorhabditis e...    37   0.19 
ref|NP_195765.1|  (NM_120223) putative protein; protein id: ...    36   0.25 
gb|AAF48305.1|  (AE003493) CG9941-PA [Drosophila melanogaster]     35   0.43 
gb|AAM67190.1|  (AY088884) putative RING zinc finger protein...    35   0.43 
ref|NP_195940.1|  (NM_120398) expressed protein; protein id:...    35   0.43 
ref|NP_519196.1|  (NC_003295) PROBABLE TWO-COMPONENT SYSTEM ...    35   0.74 
gb|EAA04818.1|  (AAAB01008810) agCP6745 [Anopheles gambiae s...    35   0.74 
gb|ZP_00043559.1|  (NZ_AAAN01000154) hypothetical protein [M...    35   0.74 
ref|NP_199282.1|  (NM_123836) putative protein; protein id: ...    35   0.74 
ref|NP_190909.1|  (NM_115201) putative protein; protein id: ...    34   0.96 
dbj|BAA25470.1|  (AB011116) KIAA0544 protein [Homo sapiens]        34   1.3  
ref|NP_510385.1|  (NM_077984) Zinc finger, C3HC4 type (RING ...    34   1.3  
ref|NP_649187.1|  (NM_140930) CG7298 gene product [Drosophil...    33   1.6  
gb|AAF49059.2|  (AE003514) CG7298-PA [Drosophila melanogaster]     33   1.6  
ref|XP_148077.1|  (XM_148077) RIKEN cDNA 2610042J20 [Mus mus...    33   1.6  
gb|ZP_00046129.1|  (NZ_AAAB01000003) hypothetical protein [L...    33   1.6  
dbj|BAB27816.1|  (AK011747) Zinc finger, C3HC4 type (RING fi...    33   1.6  
ref|NP_566724.1|  (NM_113229) auxin-regulated protein; prote...    33   2.1  
gb|AAM65682.1|  (AY088137) unknown [Arabidopsis thaliana]          33   2.1  
dbj|BAA95741.1|  (AB025608) contains similarity to ankyrin l...    33   2.1  
ref|NP_199323.1|  (NM_123878) putative protein; protein id: ...    33   2.1  
ref|NP_683586.1|  (NM_148744) auxin-regulated protein; prote...    33   2.1  
ref|NP_567428.1|  (NM_117514) Expressed protein; protein id:...    33   2.8  
emb|CAC59873.1|  (AL160371) probable heat shock protein hslu...    33   2.8  
dbj|BAB61152.1|  (AP003199) contains ESTs AU068079(C11823),A...    33   2.8  
ref|NP_181354.1|  (NM_129376) unknown protein; protein id: A...    32   3.7  
dbj|BAC10202.1|  (AP004395) contains ESTs AU055804(S20063),A...    32   4.8  
ref|NP_610973.1|  (NM_137129) CG12863 gene product [Drosophi...    32   4.8  
gb|AAF58228.2|  (AE003814) CG12863-PA [Drosophila melanogaster]    32   4.8  
gb|AAK84420.1|AF400063_1  (AF400063) neuralized 1 [Mus muscu...    32   6.2  
ref|NP_067335.1|  (NM_021360) neuralized homolog (Drosophila...    32   6.2  
ref|NP_181076.1|  (NM_129085) unknown protein; protein id: A...    32   6.2  
ref|NP_487802.1|  (NC_003272) oligopeptide binding protein o...    32   6.2  
ref|NP_203261.1|  (NC_003083) IAP-4 [Epiphyas postvittana nu...    32   6.2  
gb|AAM97032.1|  (AY136366) unknown protein [Arabidopsis thal...    32   6.2  
ref|XP_123433.1|  (XM_123433) similar to neuralized homolog ...    32   6.2  
gb|AAK97495.1|AF401228_1  (AF401228) neuralized [Mus musculus]     32   6.2  
ref|XP_085974.1|  (XM_085974) similar to zinc finger protein...    32   6.2  
pir||S68824  rngB protein, cytosolic - slime mold (Dictyoste...    32   6.2  
emb|CAB64571.1|  (AL135898) hypothetical protein L673.04 [Le...    32   6.2  
ref|NP_127506.1|  (NC_002532) replicase ORF1ab polyprotein [...    31   8.2  
ref|NP_174371.1|  (NM_102823) hypothetical protein; protein ...    31   8.2  
sp|P19811|RPOA_EAV  POL polyprotein (ORF1A/1B) [Contains: RN...    31   8.2  
ref|XP_094260.3|  (XM_094260) similar to neuralized [Homo sa...    31   8.2  
gb|AAM67026.1|  (AY088707) unknown [Arabidopsis thaliana]          31   8.2  
gb|AAL69890.1|AF419159_1  (AF419159) neuralized [Xenopus lae...    31   8.2  
ref|NP_566438.1|  (NM_112128) expressed protein; protein id:...    31   8.2  
ref|XP_116162.1|  (XM_116162) similar to evidence:NAS~hypoth...    31   8.2  
gb|AAC32390.3|  (AF082873) histidine kinase [Herbaspirillum ...    31   8.2  

Alignments


>gb|AAN04997.1| (AC105744) putative transcription initiation factor [Oryza sativa
           (japonica cultivar-group)]
          Length = 532

 Score =  292 bits (747), Expect = 2e-78
 Identities = 140/141 (99%), Positives = 140/141 (99%)
 Frame = +3

Query: 153 MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
           MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALS ARCLVCSAPITNLIREY
Sbjct: 1   MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREY 60

Query: 333 NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 512
           NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI
Sbjct: 61  NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 120

Query: 513 LEDETGQYQYQGQMEGSQSST 575
           LEDETGQYQYQGQMEGSQSST
Sbjct: 121 LEDETGQYQYQGQMEGSQSST 141



>ref|NP_192998.1| (NM_117331) putative protein; protein id: At4g12610.1 [Arabidopsis
           thaliana]
 emb|CAB53754.1| (AL049730) putative protein [Arabidopsis thaliana]
 emb|CAB78304.1| (AL161534) putative protein [Arabidopsis thaliana]
          Length = 649

 Score =  179 bits (454), Expect = 2e-44
 Identities = 85/136 (62%), Positives = 102/136 (74%)
 Frame = +3

Query: 168 LVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRAN 347
           L L  +C GCGS SDLYG+SC+H TLC  CG++MA + ++C  C   +T LIREYNVRA 
Sbjct: 5   LQLNTSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYNVRAA 64

Query: 348 ATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDET 527
           A TDK++ IGRFVTGLP F  KK +ENKWSL K+  QGRQ  +  REK   KPWILEDET
Sbjct: 65  APTDKNYFIGRFVTGLPNF--KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILEDET 122

Query: 528 GQYQYQGQMEGSQSST 575
           GQ+QYQG +EGSQS+T
Sbjct: 123 GQFQYQGHLEGSQSAT 138



>gb|AAF30307.1|AC018907_7 (AC018907) putative RING zinc finger protein [Arabidopsis thaliana]
          Length = 546

 Score = 38.1 bits (87), Expect = 0.067
 Identities = 13/32 (40%), Positives = 19/32 (58%)
 Frame = +3

Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
           C+H  +CS C K + L S +C +C  PI  L+
Sbjct: 504 CRHLCMCSDCAKELRLQSNKCPICRQPIEELL 535



>ref|NP_566274.1| (NM_111489) putative RING zinc finger protein; protein id:
           At3g06140.1, supported by cDNA: 40787. [Arabidopsis
           thaliana]
 gb|AAM65605.1| (AY088059) putative RING zinc finger protein [Arabidopsis thaliana]
          Length = 359

 Score = 38.1 bits (87), Expect = 0.067
 Identities = 13/32 (40%), Positives = 19/32 (58%)
 Frame = +3

Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
           C+H  +CS C K + L S +C +C  PI  L+
Sbjct: 317 CRHLCMCSDCAKELRLQSNKCPICRQPIEELL 348



>gb|AAM78102.1| (AY125510) AT5g19080/T16G12_120 [Arabidopsis thaliana]
          Length = 378

 Score = 38.1 bits (87), Expect = 0.067
 Identities = 13/41 (31%), Positives = 22/41 (52%)
 Frame = +3

Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326
           P D     C+H +LCS C + +   + +C +C  PI  L++
Sbjct: 328 PKDTAVMPCRHLSLCSDCAEELRFQTNKCPICRQPIHELVK 368



>ref|NP_566356.1| (NM_111812) expressed protein; protein id: At3g09770.1, supported
           by cDNA: 38757., supported by cDNA: gi_18377643
           [Arabidopsis thaliana]
 gb|AAF23258.1|AC015985_16 (AC015985) putative RING zinc finger protein [Arabidopsis thaliana]
 gb|AAF23312.1|AC016661_37 (AC016661) unknown protein [Arabidopsis thaliana]
 gb|AAL66972.1| (AY074275) putative RING zinc finger protein [Arabidopsis thaliana]
 gb|AAM65384.1| (AY087831) putative RING zinc finger protein [Arabidopsis thaliana]
          Length = 388

 Score = 37.7 bits (86), Expect = 0.087
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRAN 347
           P D     C+H  +CS C K +   + RC +C  P+  L+ E  V  N
Sbjct: 326 PRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL-EIKVHGN 372



>ref|NP_197409.1| (NM_121913) unknown protein; protein id: At5g19080.1 [Arabidopsis
           thaliana]
          Length = 378

 Score = 37.4 bits (85), Expect = 0.11
 Identities = 13/41 (31%), Positives = 21/41 (50%)
 Frame = +3

Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326
           P D     C+H  LCS C + +   + +C +C  PI  L++
Sbjct: 328 PKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVK 368



>ref|NP_510817.1| (NM_078416) F10D7.5b.p [Caenorhabditis elegans]
          Length = 750

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 11/36 (30%), Positives = 21/36 (57%)
 Frame = +3

Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
           +C H  +C  CG+ +  +   C +C AP+ ++I+ Y
Sbjct: 713 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 748



>gb|AAL86506.1|AC099040_10 (AC099040) putative hydroxyproline-rich glycoprotein [Oryza sativa
           (japonica cultivar-group)]
 gb|AAM18751.1|AC099325_7 (AC099325) unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 425

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 13/40 (32%), Positives = 20/40 (49%)
 Frame = +3

Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
           P D     C+H  +CS C K +   + RC +C  P+  L+
Sbjct: 350 PRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERLL 389



>gb|AAM81093.1|U40945_8 (U40945) Hypothetical protein F10D7.5d [Caenorhabditis elegans]
          Length = 465

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 11/36 (30%), Positives = 21/36 (57%)
 Frame = +3

Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
           +C H  +C  CG+ +  +   C +C AP+ ++I+ Y
Sbjct: 428 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 463



>ref|NP_510818.1| (NM_078417) D. melanogaster finger protein neuralized
           [Caenorhabditis elegans]
          Length = 795

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 11/36 (30%), Positives = 21/36 (57%)
 Frame = +3

Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
           +C H  +C  CG+ +  +   C +C AP+ ++I+ Y
Sbjct: 758 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 793



>gb|AAM81090.1|U40945_5 (U40945) Hypothetical protein F10D7.5a [Caenorhabditis elegans]
          Length = 634

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 11/36 (30%), Positives = 21/36 (57%)
 Frame = +3

Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
           +C H  +C  CG+ +  +   C +C AP+ ++I+ Y
Sbjct: 597 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 632



>pir||T16028 hypothetical protein F10D7.5 - Caenorhabditis elegans
          Length = 824

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 11/36 (30%), Positives = 21/36 (57%)
 Frame = +3

Query: 225 SCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
           +C H  +C  CG+ +  +   C +C AP+ ++I+ Y
Sbjct: 787 TCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 822



>ref|NP_195765.1| (NM_120223) putative protein; protein id: At5g01450.1 [Arabidopsis
           thaliana]
 pir||T48167 hypothetical protein T10O8.160 - Arabidopsis thaliana
 emb|CAB81928.1| (AL161746) putative protein [Arabidopsis thaliana]
          Length = 428

 Score = 36.2 bits (82), Expect = 0.25
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 150 AMGSADLVLKAACEGC-GSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326
           A G      +  C  C  +P D +  SC H   C  CG  +A +S  C VC   I  + +
Sbjct: 365 AHGEGHSSTRYLCAICYDAPRDCFFLSCGHCVACFQCGTRIAETSGFCPVCRKKIRKVKK 424

Query: 327 EYNV 338
            +NV
Sbjct: 425 IFNV 428



>gb|AAF48305.1| (AE003493) CG9941-PA [Drosophila melanogaster]
          Length = 789

 Score = 35.4 bits (80), Expect = 0.43
 Identities = 14/43 (32%), Positives = 23/43 (52%)
 Frame = +3

Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATT 356
           C+H  LC+SC  S+   +  C +C AP   L++   V+   +T
Sbjct: 334 CRHLCLCNSCADSLRYQANNCPICRAPFRALLQIRAVQKGIST 376



>gb|AAM67190.1| (AY088884) putative RING zinc finger protein [Arabidopsis thaliana]
          Length = 337

 Score = 35.4 bits (80), Expect = 0.43
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 186 CEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
           C  C S P D     C+H  +CS C K++   +  C VC  P+  L+
Sbjct: 285 CVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLL 331



>ref|NP_195940.1| (NM_120398) expressed protein; protein id: At5g03200.1, supported
           by cDNA: 98672. [Arabidopsis thaliana]
 pir||T48341 hypothetical protein F15A17.230 - Arabidopsis thaliana
 emb|CAB86087.1| (AL163002) putative protein [Arabidopsis thaliana]
 dbj|BAB08380.1| (AB005240) RING zinc finger protein-like [Arabidopsis thaliana]
          Length = 337

 Score = 35.4 bits (80), Expect = 0.43
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 186 CEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
           C  C S P D     C+H  +CS C K++   +  C VC  P+  L+
Sbjct: 285 CVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLL 331



>ref|NP_519196.1| (NC_003295) PROBABLE TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE
           TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
 emb|CAD14777.1| (AL646062) PROBABLE TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE
           TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
          Length = 784

 Score = 34.7 bits (78), Expect = 0.74
 Identities = 21/43 (48%), Positives = 25/43 (57%)
 Frame = +2

Query: 167 PGAEGGVRGLRLAVGPLRHVMQAHHALQLLRQIHGALQRPLPR 295
           P  +  VRGL LA GP  H++  H ALQL RQ   AL   +PR
Sbjct: 173 PDPDSVVRGLYLAEGPRGHLLD-HLALQLARQAGPALAGDVPR 214



>gb|EAA04818.1| (AAAB01008810) agCP6745 [Anopheles gambiae str. PEST]
          Length = 307

 Score = 34.7 bits (78), Expect = 0.74
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326
           C+H  LC+SC  S+   +  C +C AP   L++
Sbjct: 246 CRHLCLCNSCADSLRYQANNCPICRAPFRALLQ 278



>gb|ZP_00043559.1| (NZ_AAAN01000154) hypothetical protein [Magnetococcus sp. MC-1]
          Length = 487

 Score = 34.7 bits (78), Expect = 0.74
 Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
 Frame = +3

Query: 150 AMGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVC-SAPITNLIR 326
           AM   D  ++  C  CG+  D YG SC+   +CS+  +   L  A+C VC S P+     
Sbjct: 130 AMFLPDRFIRGTCPHCGAV-DQYGDSCE---VCSATYRPTELKEAKCAVCGSQPVEKSSE 185

Query: 327 EY 332
            Y
Sbjct: 186 HY 187



>ref|NP_199282.1| (NM_123836) putative protein; protein id: At5g44690.1 [Arabidopsis
           thaliana]
 dbj|BAB08822.1| (AB016874) gene_id:K23L20.2~pir||T00474~similar to unknown protein
           [Arabidopsis thaliana]
          Length = 684

 Score = 34.7 bits (78), Expect = 0.74
 Identities = 16/54 (29%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
 Frame = +3

Query: 174 LKAACEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREY 332
           L+  C  C   P D     C H   C  C   +  S+ +C +C API +++R +
Sbjct: 628 LERNCSICFEMPIDSLLYRCGHMCTCLKCAHELQWSNMKCPICMAPIVDVVRAF 681



>ref|NP_190909.1| (NM_115201) putative protein; protein id: At3g53410.1, supported by
           cDNA: 110247. [Arabidopsis thaliana]
 pir||T45881 hypothetical protein F4P12.110 - Arabidopsis thaliana
 emb|CAB67648.1| (AL132966) putative protein [Arabidopsis thaliana]
 gb|AAM61084.1| (AY084516) putative RING zinc finger protein [Arabidopsis thaliana]
          Length = 299

 Score = 34.3 bits (77), Expect = 0.96
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLI 323
           P D     C+H  +CS C K +   +  C +C  P+  L+
Sbjct: 250 PRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQPVDRLL 289



>dbj|BAA25470.1| (AB011116) KIAA0544 protein [Homo sapiens]
          Length = 583

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 207 SDLYGT---SCKHTTLCSSCGKSMALSSARCLVCSAPITNL--IREYNVRANATTDKSFS 371
           SDL  T    C+H  LC+SC  ++   +  C +C  P   L  IR    +  A +  SFS
Sbjct: 314 SDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFS 373



>ref|NP_510385.1| (NM_077984) Zinc finger, C3HC4 type (RING finger) [Caenorhabditis
           elegans]
 pir||T19204 hypothetical protein C11H1.3 - Caenorhabditis elegans
 emb|CAA94116.1| (Z70205) predicted using Genefinder~contains similarity to Pfam
           domain: PF00097 (Zinc finger, C3HC4 type (RING finger)),
           Score=29.8, E-value=2.2e-08, N=1~cDNA EST yk67c6.5 comes
           from this gene~cDNA EST yk597f9.5 comes from this
           gene~cDNA EST yk653f11.5>
          Length = 529

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIR 326
           C+H  +CS+C  S+      C +C +P   LIR
Sbjct: 284 CRHLCVCSNCADSLRYKHNNCPICRSPFRALIR 316



>ref|NP_649187.1| (NM_140930) CG7298 gene product [Drosophila melanogaster]
 gb|AAL28884.1| (AY061336) LD26327p [Drosophila melanogaster]
          Length = 369

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 26/87 (29%), Positives = 37/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 144 SPAMGSADLVLKAACEGCGSPSDLYGT--SCKHTTLCSSCGKSMALSSARCLVCSAPITN 317
           S   G+ + VL++ C+    P   +G   SC     C S    + L S +C        N
Sbjct: 144 SNTQGTNETVLESLCDVV-PPGQYFGDTESCSTWHYCESTSTGLVLQSGKCSA------N 196

Query: 318 LIREYNVRANATTDKSFSIGRFVTGLP 398
               YNV AN  T +S S+   VT +P
Sbjct: 197 NQTAYNVLANQCTYESASVCSRVTNIP 223



>gb|AAF49059.2| (AE003514) CG7298-PA [Drosophila melanogaster]
          Length = 356

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 26/87 (29%), Positives = 37/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 144 SPAMGSADLVLKAACEGCGSPSDLYGT--SCKHTTLCSSCGKSMALSSARCLVCSAPITN 317
           S   G+ + VL++ C+    P   +G   SC     C S    + L S +C        N
Sbjct: 131 SNTQGTNETVLESLCDVV-PPGQYFGDTESCSTWHYCESTSTGLVLQSGKCSA------N 183

Query: 318 LIREYNVRANATTDKSFSIGRFVTGLP 398
               YNV AN  T +S S+   VT +P
Sbjct: 184 NQTAYNVLANQCTYESASVCSRVTNIP 210



>ref|XP_148077.1| (XM_148077) RIKEN cDNA 2610042J20 [Mus musculus]
          Length = 578

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 207 SDLYGT---SCKHTTLCSSCGKSMALSSARCLVCSAPITNL--IREYNVRANATTDKSFS 371
           SDL  T    C+H  LC+SC  ++   +  C +C  P   L  IR    +  A +  SFS
Sbjct: 283 SDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPISFS 342



>gb|ZP_00046129.1| (NZ_AAAB01000003) hypothetical protein [Lactobacillus gasseri]
          Length = 281

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 24/95 (25%), Positives = 40/95 (41%)
 Frame = +3

Query: 246 CSSCGKSMALSSARCLVCSAPITNLIREYNVRANATTDKSFSIGRFVTGLPPFSKKKSAE 425
           C +CGK + L  A+C  C     N     N+ A    D    +G  +  +P   KK   E
Sbjct: 5   CPNCGKEVNLGEAKCPFCGYDFVN-----NINAKIPADLGM-MGIRLNNVPKKKKKAEPE 58

Query: 426 NKWSLHKEGLQGRQIPENMREKYNRKPWILEDETG 530
           NK  + K   Q   + +    K+ +K  +++ + G
Sbjct: 59  NK-RVEKNTTQKVAVTKAKELKHAKKNKVVKKKKG 92



>dbj|BAB27816.1| (AK011747) Zinc finger, C3HC4 type (RING finger) containing
           protein~data source:Pfam, source key:PF00097,
           evidence:ISS~putative [Mus musculus]
          Length = 494

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 207 SDLYGT---SCKHTTLCSSCGKSMALSSARCLVCSAPITNL--IREYNVRANATTDKSFS 371
           SDL  T    C+H  LC+SC  ++   +  C +C  P   L  IR    +  A +  SFS
Sbjct: 245 SDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPISFS 304



>ref|NP_566724.1| (NM_113229) auxin-regulated protein; protein id: At3g23280.1,
           supported by cDNA: 41648. [Arabidopsis thaliana]
          Length = 462

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
           +PS+     C H   C SC K +   +  C VC A I  +I+ Y V
Sbjct: 417 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 462



>gb|AAM65682.1| (AY088137) unknown [Arabidopsis thaliana]
          Length = 462

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
           +PS+     C H   C SC K +   +  C VC A I  +I+ Y V
Sbjct: 417 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 462



>dbj|BAA95741.1| (AB025608) contains similarity to ankyrin like
           protein~gene_id:K14B15.19 [Arabidopsis thaliana]
          Length = 454

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
           +PS+     C H   C SC K +   +  C VC A I  +I+ Y V
Sbjct: 409 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 454



>ref|NP_199323.1| (NM_123878) putative protein; protein id: At5g45100.1, supported by
           cDNA: gi_16604441 [Arabidopsis thaliana]
 dbj|BAB09495.1| (AB019224) gene_id:K17O22.9~pir||T04751~strong similarity to
           unknown protein [Arabidopsis thaliana]
 gb|AAL24227.1| (AY058839) AT5g45100/K17O22_9 [Arabidopsis thaliana]
          Length = 294

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
 Frame = +3

Query: 156 GSADLVLKAACEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPIT 314
           G    V+   C+ CG   + +    C+H  LC+ CG S  L +  C VC   +T
Sbjct: 234 GDVTAVVNGGCKRCGELTASVLVLPCRHLCLCTVCGSSALLRT--CPVCDMVMT 285



>ref|NP_683586.1| (NM_148744) auxin-regulated protein; protein id: At3g23280.2,
           supported by cDNA: gi_15010671, supported by cDNA:
           gi_16974316 [Arabidopsis thaliana]
 gb|AAK73995.1| (AY045637) AT3g23280/K14B15_17 [Arabidopsis thaliana]
 gb|AAL31143.1| (AY059650) AT3g23280/K14B15_17 [Arabidopsis thaliana]
          Length = 438

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
           +PS+     C H   C SC K +   +  C VC A I  +I+ Y V
Sbjct: 393 APSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 438



>ref|NP_567428.1| (NM_117514) Expressed protein; protein id: At4g14365.1, supported
           by cDNA: 37809., supported by cDNA: gi_13358233,
           supported by cDNA: gi_17065423, supported by cDNA:
           gi_20148546 [Arabidopsis thaliana]
 gb|AAG40396.1|AF325044_1 (AF325044) AT4g14360 [Arabidopsis thaliana]
 gb|AAL32866.1| (AY062788) ankyrin homolog [Arabidopsis thaliana]
 gb|AAM10164.1| (AY081602) ankyrin homolog [Arabidopsis thaliana]
          Length = 376

 Score = 32.7 bits (73), Expect = 2.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 201 SPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
           +PS+     C H   C SC K +      C VC A I  +I+ Y+V
Sbjct: 331 APSEAVCVPCGHVAGCISCLKEIENKKMGCPVCRANIDQVIKLYHV 376



>emb|CAC59873.1| (AL160371) probable heat shock protein hslu [Leishmania major]
          Length = 288

 Score = 32.7 bits (73), Expect = 2.8
 Identities = 29/120 (24%), Positives = 48/120 (39%), Gaps = 2/120 (1%)
 Frame = +3

Query: 177 KAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATT 356
           +A    C S     G +  HT L      S A ++A     +AP+TN   +  +R     
Sbjct: 3   RALSLSCRSSVAATGAASSHTLLTGVRCCSTAAAAAAAPAPAAPLTNPGSKTLIRDMRPR 62

Query: 357 DKSFSIGRFVTGLPPFSKKKSA--ENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETG 530
           +    + R++ G     K  S    N+W  H       Q+P ++RE+   K  ++   TG
Sbjct: 63  ELMKELDRYIVGQSEAKKAVSVALRNRWRRH-------QVPSDIREEIAPKNILMIGPTG 115



>dbj|BAB61152.1| (AP003199) contains ESTs AU068079(C11823),AU068080(C11823)~similar
           to Arabidopsis thaliana chromosome 3, F4P12.110~unknown
           protein [Oryza sativa (japonica cultivar-group)]
          Length = 313

 Score = 32.7 bits (73), Expect = 2.8
 Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
 Frame = +3

Query: 186 CEGCGS-PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
           C  C S P D     C+H  LC  C + +   + +C +C  P+  L RE  V
Sbjct: 246 CVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKCPICRQPVEGL-REIEV 296



>ref|NP_181354.1| (NM_129376) unknown protein; protein id: At2g38190.1 [Arabidopsis
           thaliana]
 pir||T01251 hypothetical protein F16M14.12 - Arabidopsis thaliana
 gb|AAC27168.1| (AC003028) unknown protein [Arabidopsis thaliana]
          Length = 124

 Score = 32.3 bits (72), Expect = 3.7
 Identities = 13/45 (28%), Positives = 20/45 (43%)
 Frame = +3

Query: 204 PSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNV 338
           P D +   C H+  C  CG +M  +   C +C   +  + R Y V
Sbjct: 80  PRDCFFLPCGHSVSCYECGTTMQEADGSCPICRRKMKKVKRIYTV 124



>dbj|BAC10202.1| (AP004395) contains ESTs
           AU055804(S20063),AU055998(S20213),
           AU055803(S20063)~similar to ankyrin homolog [Oryza
           sativa (japonica cultivar-group)]
          Length = 489

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = +3

Query: 156 GSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYN 335
           G+  + L A  EG   P       C H   C SC K +      C +C A I  +IR Y 
Sbjct: 436 GTCVICLDAPVEGACIP-------CGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYA 488

Query: 336 V 338
           V
Sbjct: 489 V 489



>ref|NP_610973.1| (NM_137129) CG12863 gene product [Drosophila melanogaster]
 gb|AAL48827.1| (AY071205) RE24565p [Drosophila melanogaster]
          Length = 184

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 27/116 (23%), Positives = 43/116 (36%)
 Frame = +3

Query: 186 CEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATTDKS 365
           C  CG    + G + KH   C +C K   +  + C  C+    +    Y  + +      
Sbjct: 69  CNRCGKCPSVNGQTYKHCESCDACVKPNYVHCSDCRRCTQKEGHNCSFYQTKQHCW--MC 126

Query: 366 FSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETGQ 533
              G   T  P F K+K+   K  L       R+   + R KY R+   + + T Q
Sbjct: 127 GQKGHIETKCPNFRKRKTNYTKGCLLCGKRNHREKRCSYRSKYFREQCFMNETTIQ 182



>gb|AAF58228.2| (AE003814) CG12863-PA [Drosophila melanogaster]
          Length = 425

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 27/116 (23%), Positives = 43/116 (36%)
 Frame = +3

Query: 186 CEGCGSPSDLYGTSCKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYNVRANATTDKS 365
           C  CG    + G + KH   C +C K   +  + C  C+    +    Y  + +      
Sbjct: 310 CNRCGKCPSVNGQTYKHCESCDACVKPNYVHCSDCRRCTQKEGHNCSFYQTKQHCW--MC 367

Query: 366 FSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETGQ 533
              G   T  P F K+K+   K  L       R+   + R KY R+   + + T Q
Sbjct: 368 GQKGHIETKCPNFRKRKTNYTKGCLLCGKRNHREKRCSYRSKYFREQCFMNETTIQ 423



>gb|AAK84420.1|AF400063_1 (AF400063) neuralized 1 [Mus musculus]
          Length = 574

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
 Frame = +3

Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332
           +C H  LC SCG  +  +  A C +C  PI ++I+ Y
Sbjct: 535 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 571



>ref|NP_067335.1| (NM_021360) neuralized homolog (Drosophila) [Mus musculus]
 emb|CAB65238.1| (Y15160) neuralized-like protein [Mus musculus]
          Length = 574

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
 Frame = +3

Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332
           +C H  LC SCG  +  +  A C +C  PI ++I+ Y
Sbjct: 535 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 571



>ref|NP_181076.1| (NM_129085) unknown protein; protein id: At2g35330.1 [Arabidopsis
           thaliana]
 gb|AAC36187.1| (AC005314) unknown protein [Arabidopsis thaliana]
          Length = 711

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
 Frame = +3

Query: 228 CKHTTLCSSCGKS-MALSSARCLVCSAPITNLIREY 332
           C H  +C+SC  S M    A C  C AP+   IR +
Sbjct: 672 CAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVF 707



>ref|NP_487802.1| (NC_003272) oligopeptide binding protein of ABC transporter [Nostoc
           sp. PCC 7120]
 dbj|BAB75461.1| (AP003594) oligopeptide binding protein of ABC transporter [Nostoc
           sp. PCC 7120]
          Length = 588

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
 Frame = +3

Query: 333 NVRANATTDKSFSIGRFVTGLPPFSKK---KSAENKWSLHKEGLQGRQIPENMREKYN 497
           N    ATT  ++ + + V  +  ++ K   +S    WSL   GL G  IP ++ EK+N
Sbjct: 143 NPAVGATTSANYEVVKSVEAIDDYTVKVNFQSPNPAWSLPFVGLNGMIIPRHIFEKFN 200



>ref|NP_203261.1| (NC_003083) IAP-4 [Epiphyas postvittana nucleopolyhedrovirus]
 gb|AAD19699.1| (AF119228) apoptosis inhibitor iap-4 [Epiphyas postvittana
           nucleopolyhedrovirus]
 gb|AAK85656.1| (AY043265) IAP-4 [Epiphyas postvittana nucleopolyhedrovirus]
          Length = 141

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (57%)
 Frame = +3

Query: 228 CKHTTLCSSCGKSMALSSARCLVCSAPITNLIREYN 335
           C H TLC+ C  S+ +    CL+C  P+T  + +YN
Sbjct: 106 CGHYTLCTVC--SVQMCGKPCLLCQMPVTEYV-DYN 138



>gb|AAM97032.1| (AY136366) unknown protein [Arabidopsis thaliana]
          Length = 738

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
 Frame = +3

Query: 228 CKHTTLCSSCGKS-MALSSARCLVCSAPITNLIREY 332
           C H  +C+SC  S M    A C  C AP+   IR +
Sbjct: 699 CAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVF 734



>ref|XP_123433.1| (XM_123433) similar to neuralized homolog (Drosophila) [Mus
           musculus]
          Length = 499

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
 Frame = +3

Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332
           +C H  LC SCG  +  +  A C +C  PI ++I+ Y
Sbjct: 460 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 496



>gb|AAK97495.1|AF401228_1 (AF401228) neuralized [Mus musculus]
          Length = 557

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
 Frame = +3

Query: 225 SCKHTTLCSSCGKSMALS-SARCLVCSAPITNLIREY 332
           +C H  LC SCG  +  +  A C +C  PI ++I+ Y
Sbjct: 518 TCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 554



>ref|XP_085974.1| (XM_085974) similar to zinc finger protein [Homo sapiens]
          Length = 241

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
 Frame = +3

Query: 186 CEGCGSPSDLYGTSCKHTTL--------CSSCGKSMALSS---ARCLVCS 302
           C  CG   +   T C+H  +        CS CGKS + SS     C +C+
Sbjct: 187 CHACGKAFNTSSTLCQHNRIHTGEKPFQCSQCGKSFSCSSHLTRHCRMCN 236






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Sep 19, 2002  1:01 AM
  Number of letters in database: 370,891,306
  Number of sequences in database:  1,171,253
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342,546,019
Number of Sequences: 1171253
Number of extensions: 6751909
Number of successful extensions: 24973
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 23403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24941
length of database: 370,891,306
effective HSP length: 115
effective length of database: 236,197,211
effective search space used: 17950988036
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)