BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6273291|gb|AF191665.1|AF191665 Opuntia marenae rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
         (902 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           8,994,603 sequences; 3,078,807,967 total letters

Searching..................................................done

 ***** No hits found ******


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6273290|gb|AF191664.1|AF191664 Opuntia clavata rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
         (899 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           8,994,603 sequences; 3,078,807,967 total letters

Searching..................................................done

 ***** No hits found ******


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6273289|gb|AF191663.1|AF191663 Opuntia bradtiana rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
         (899 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           8,994,603 sequences; 3,078,807,967 total letters

Searching..................................................done

 ***** No hits found ******


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6273287|gb|AF191661.1|AF191661 Opuntia kuehnrichiana rpl16
gene; chloroplast gene for chloroplast product, partial intron
sequence
         (895 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           8,994,603 sequences; 3,078,807,967 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAE48041.1| hypothetical protein [Nicotiana tomentosiformis]       51   8e-07
emb|CAJ32483.1| hypothetical protein [Nicotiana tabacum] >gi|777...    51   8e-07

>dbj|BAE48041.1| hypothetical protein [Nicotiana tomentosiformis]
          Length = 79

 Score = 51.2 bits (121), Expect(2) = 8e-07
 Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +2

Query: 290 MGTM*SMNTEDSIEKDP-MIHWEGWRNEPETNSSILKSDK 406
           MGT   +N +DSIEK   MIHW GWRNEPE NS I +S+K
Sbjct: 1   MGTTELVNAKDSIEKGILMIHWSGWRNEPEINSCIRRSEK 40



 Score = 27.3 bits (59), Expect(2) = 8e-07
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 423 KIDIERVNIRPRKFLFFLNCSYF 491
           +I IERVNIRPRK     N   +
Sbjct: 48  EIGIERVNIRPRKLFLLQNLGQY 70


>emb|CAJ32483.1| hypothetical protein [Nicotiana tabacum]
 dbj|BAE46692.1| hypothetical protein [Nicotiana sylvestris]
          Length = 79

 Score = 51.2 bits (121), Expect(2) = 8e-07
 Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +2

Query: 290 MGTM*SMNTEDSIEKDP-MIHWEGWRNEPETNSSILKSDK 406
           MGT   +N +DSIEK   MIHW GWRNEPE NS I +S+K
Sbjct: 1   MGTTELVNAKDSIEKGILMIHWSGWRNEPEINSCIRRSEK 40



 Score = 27.3 bits (59), Expect(2) = 8e-07
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 423 KIDIERVNIRPRKFLFFLNCSYF 491
           +I IERVNIRPRK     N   +
Sbjct: 48  EIGIERVNIRPRKLFLLQNLGQY 70


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6273286|gb|AF191660.1|AF191660 Opuntia echinacea rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
         (893 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           8,994,603 sequences; 3,078,807,967 total letters

Searching..................................................done

 ***** No hits found ******


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6273285|gb|AF191659.1|AF191659 Opuntia pachypus rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
         (894 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           8,994,603 sequences; 3,078,807,967 total letters

Searching..................................................done

 ***** No hits found ******


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6273284|gb|AF191658.1|AF191658 Opuntia subulata rpl16 gene;
chloroplast gene for chloroplast product, partial intron sequence
         (896 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           8,994,603 sequences; 3,078,807,967 total letters

Searching..................................................done

 ***** No hits found ******


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jun 4, 2009  5:40 PM
  Number of letters in database: 3,078,807,967
  Number of sequences in database:  8,994,603
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8994603
Number of Hits to DB: 25,131,630,959
Number of extensions: 479411075
Number of successful extensions: 804218
Number of sequences better than 1.0e-04: 2
Number of HSP's gapped: 803721
Number of HSP's successfully gapped: 4
Length of database: 3,078,807,967
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)