BLASTX 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4104054|gb|AH007193.1|SEG_CVIGS Centaurea vallesiaca 18S ribosomal RNA gene, partial sequence (1002 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 8,994,603 sequences; 3,078,807,967 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABR25402.1| unknown [Oryza sativa (indica cultivar-group)] 54 2e-05 >gb|ABR25402.1| unknown [Oryza sativa (indica cultivar-group)] Length = 26 Score = 54.3 bits (129), Expect = 2e-05 Identities = 24/26 (92%), Positives = 25/26 (96%) Frame = +2 Query: 911 HMLVSKIKPCMCKYEQIQTVKLRMAH 988 HMLVSKIKPCMCKYE I+TVKLRMAH Sbjct: 1 HMLVSKIKPCMCKYELIRTVKLRMAH 26 BLASTX 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4218935|gb|AF074388.1|AF074388 Sambucus nigra hevein-like protein HLPf gene, partial cds (2050 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 8,994,603 sequences; 3,078,807,967 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAD12237.1| hevein-like protein HLPf [Sambucus nigra] 410 e-112 gb|AAD11408.1| hevein-like protein [Sambucus nigra] 406 e-111 gb|AAD11406.1| hevein-like protein [Sambucus nigra] 406 e-111 gb|AAD11407.1| hevein-like protein [Sambucus nigra] 395 e-108 gb|AAL30421.1|AF434174_1 hevein-like protein [Sambucus nigra] 384 e-104 gb|AAL30422.1|AF434175_1 hevein-like protein [Sambucus nigra] 279 9e-73 gb|AAO17294.1| chitinase [Ficus carica] 189 7e-46 gb|ACM45713.1| class I chitinase [Pyrus pyrifolia] 185 2e-44 dbj|BAB40817.2| endochitinase MCHT-2 [Cucumis melo] 181 2e-43 gb|ABB86300.1| chitinase [Ficus awkeotsang] 181 3e-43 >gb|AAD12237.1| hevein-like protein HLPf [Sambucus nigra] Length = 333 Score = 410 bits (1053), Expect = e-112 Identities = 198/238 (83%), Positives = 199/238 (83%) Frame = +1 Query: 1 MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE 180 MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE Sbjct: 1 MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE 60 Query: 181 DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF 360 DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF Sbjct: 61 DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF 120 Query: 361 ITAARSFPGFCTSGDVATRKREPAAFLXXXXXXXXXXXXNLNIYLC*EIISTIYICFEIN 540 ITAARSFPGFCTSGDVATRKREPAAFL Sbjct: 121 ITAARSFPGFCTSGDVATRKREPAAFLS-------------------------------- 148 Query: 541 LRTWMLGVGGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT 714 +T GGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT Sbjct: 149 -QTSQATTGGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT 205 Score = 267 bits (683), Expect = 3e-69 Identities = 127/127 (100%), Positives = 127/127 (100%) Frame = +1 Query: 1669 NYNYGLAGEALGIDLVNHPDLVATDPIVSFKTAIWFWMTQHDNNPSLHDILINANSEASD 1848 NYNYGLAGEALGIDLVNHPDLVATDPIVSFKTAIWFWMTQHDNNPSLHDILINANSEASD Sbjct: 207 NYNYGLAGEALGIDLVNHPDLVATDPIVSFKTAIWFWMTQHDNNPSLHDILINANSEASD 266 Query: 1849 QVPSYGVISKIINSNFGHQSGLDTITTSIGYYKRYCDMLEVSYGDNLENWFDETPFTKVA 2028 QVPSYGVISKIINSNFGHQSGLDTITTSIGYYKRYCDMLEVSYGDNLENWFDETPFTKVA Sbjct: 267 QVPSYGVISKIINSNFGHQSGLDTITTSIGYYKRYCDMLEVSYGDNLENWFDETPFTKVA 326 Query: 2029 HIKMSVV 2049 HIKMSVV Sbjct: 327 HIKMSVV 333 BLASTX 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|5690369|gb|AF158246.1|AF158246 Cricetulus griseus glucose phosphate isomerase (GPI) gene, partial intron sequence (550 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 8,994,603 sequences; 3,078,807,967 total letters Searching..................................................done ***** No hits found ****** BLASTX 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|5049839|gb|AI730987.1|AI730987 BNLGHi8354 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to TUBULIN BETA-1 CHAIN gi|486734|pir|S35142 tubulin beta chain - white lupine gi|402636 (X70184) Beta tubulin 1 [Lupinus albus], mRNA sequence (655 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 8,994,603 sequences; 3,078,807,967 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABY86655.1| beta-tubulin 4 [Gossypium hirsutum] 408 e-112 gb|EEF51386.1| tubulin beta chain, putative [Ricinus communis] 406 e-112 ref|NP_568437.1| TUB8 (tubulin beta-8) [Arabidopsis thaliana] >g... 405 e-111 ref|XP_002271992.1| PREDICTED: hypothetical protein [Vitis vinif... 402 e-110 gb|AAK96884.1| beta tubulin [Arabidopsis thaliana] >gi|20148289|... 402 e-110 ref|XP_002267380.1| PREDICTED: hypothetical protein [Vitis vinif... 402 e-110 sp|P37392.1|TBB1_LUPAL RecName: Full=Tubulin beta-1 chain; AltNa... 402 e-110 ref|XP_002313404.1| tubulin, beta chain [Populus trichocarpa] >g... 401 e-110 gb|EEF51167.1| tubulin beta chain, putative [Ricinus communis] 400 e-110 ref|XP_002299541.1| tubulin, beta chain [Populus trichocarpa] >g... 400 e-110 >gb|ABY86655.1| beta-tubulin 4 [Gossypium hirsutum] Length = 448 Score = 408 bits (1048), Expect = e-112 Identities = 196/201 (97%), Positives = 197/201 (98%) Frame = +2 Query: 50 MREILHIQAGQCGNQIGANFWEVVCAEHGINSTGRYQGDNDLQLERVNVYYNEASCGRFV 229 MREILHIQAGQCGNQIGA FWEVVCAEHGI+STGRYQGDNDLQLERVNVYYNEASCGRFV Sbjct: 1 MREILHIQAGQCGNQIGAKFWEVVCAEHGIDSTGRYQGDNDLQLERVNVYYNEASCGRFV 60 Query: 230 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSXLDVV 409 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDS LDVV Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120 Query: 410 RKEAENCDCLQGFQVCHSLGRGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 589 RKEAENCDCLQGFQVCHSLG GTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180 Query: 590 EPYNATLSVHXLVENADECMV 652 EPYNATLSVH LVENADECMV Sbjct: 181 EPYNATLSVHQLVENADECMV 201 BLASTX 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|5052071|gb|AF067555.1|AF067555 Phlox stansburyi internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence (623 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 8,994,603 sequences; 3,078,807,967 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAE98425.1| hypothetical protein [Arabidopsis thaliana] 94 6e-19 gb|EEH50844.1| predicted protein [Micromonas pusilla CCMP1545] 96 2e-18 ref|XP_001786502.1| predicted protein [Physcomitrella patens sub... 75 4e-12 ref|XP_001786120.1| predicted protein [Physcomitrella patens sub... 73 2e-11 ref|XP_001786259.1| predicted protein [Physcomitrella patens sub... 73 2e-11 ref|XP_001786759.1| predicted protein [Physcomitrella patens sub... 73 2e-11 ref|XP_001786133.1| predicted protein [Physcomitrella patens sub... 71 8e-11 sp|Q8TGM5|ART3_YEAST Uncharacterized protein ART3 (Antisense to ... 59 3e-07 ref|XP_001786634.1| predicted protein [Physcomitrella patens sub... 57 9e-07 ref|XP_453851.1| unnamed protein product [Kluyveromyces lactis] 56 2e-06 >dbj|BAE98425.1| hypothetical protein [Arabidopsis thaliana] Length = 80 Score = 93.6 bits (231), Expect(2) = 6e-19 Identities = 42/48 (87%), Positives = 45/48 (93%) Frame = +1 Query: 283 MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHVCLGVSHRVAPNP 426 MKNVAKCDTWCELQNPVNHRVFERKLRPKP GRGHVCLGV++R P+P Sbjct: 1 MKNVAKCDTWCELQNPVNHRVFERKLRPKPSGRGHVCLGVTNR-RPSP 47 Score = 25.0 bits (53), Expect(2) = 6e-19 Identities = 13/17 (76%), Positives = 13/17 (76%) Frame = +2 Query: 455 RKLVSRALRCAVGLNKS 505 RKLVSR L AVGLN S Sbjct: 54 RKLVSRVLPHAVGLNPS 70 BLASTX 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|3176602|gb|U78617.1|LOU78617 Lathyrus odoratus phytochrome A (PHYA) gene, partial cds (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 8,994,603 sequences; 3,078,807,967 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC18749.1| phytochrome A [Lathyrus odoratus] 213 4e-54 sp|P15001.1|PHYA_PEA RecName: Full=Phytochrome A >gi|169132|gb|A... 208 1e-52 sp|P93673.1|PHYA_LATSA RecName: Full=Phytochrome type A >gi|1848... 208 1e-52 gb|AAC18745.1| phytochrome A [Lennea melanocarpa] >gi|3176597|gb... 207 2e-52 gb|AAC18675.1| phytochrome A [Sophora affinis] 207 2e-52 gb|AAC18670.1| phytochrome A [Myrospermum sousanum] 206 5e-52 gb|AAC18750.1| phytochrome A [Hybosema robustum] 206 6e-52 gb|AAC18668.1| phytochrome A [Cyclolobium nutans] 206 8e-52 gb|AAC18709.1| phytochrome A [Millettia richardiana] 205 1e-51 gb|AAC18693.1| phytochrome A [Callerya atropurpurea] 204 2e-51 >gb|AAC18749.1| phytochrome A [Lathyrus odoratus] Length = 103 Score = 213 bits (543), Expect = 4e-54 Identities = 103/103 (100%), Positives = 103/103 (100%) Frame = +1 Query: 1 QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA 180 QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA Sbjct: 1 QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA 60 Query: 181 SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV 309 SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV Sbjct: 61 SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV 103 BLASTX 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|5817701|gb|AF142731.1|AF142731 Wisteria frutescens maturase-like protein (matK) gene, complete cds; chloroplast gene for chloroplast product (2551 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 8,994,603 sequences; 3,078,807,967 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|Q9TKP6.1|MATK_WISFR RecName: Full=Maturase K; AltName: Full=I... 948 0.0 gb|ACB58148.1| maturase K [Wisteria frutescens] 946 0.0 gb|ACB58149.1| maturase K [Wisteria frutescens] >gi|171909148|gb... 945 0.0 gb|ACB58142.1| maturase K [Callerya megasperma] 944 0.0 gb|AAD52903.1|AF142732_1 maturase-like protein [Wisteria sinensi... 936 0.0 gb|ACB58143.1| maturase K [Wisteria brachybotrys] 928 0.0 gb|AAD52904.1|AF142733_1 maturase-like protein [Callerya reticul... 925 0.0 gb|AAD52905.1|AF142734_1 maturase-like protein [Callerya atropur... 890 0.0 gb|ABS20107.1| maturase-like protein [Astragalus uliginosus] 887 0.0 dbj|BAF57483.1| maturase [Glycyrrhiza uralensis] >gi|146197444|d... 887 0.0 >sp|Q9TKP6.1|MATK_WISFR RecName: Full=Maturase K; AltName: Full=Intron maturase gb|AAD52902.1|AF142731_1 maturase-like protein [Wisteria frutescens] Length = 506 Score = 948 bits (2451), Expect = 0.0 Identities = 474/506 (93%), Positives = 474/506 (93%) Frame = +1 Query: 727 MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL 906 MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL Sbjct: 1 MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL 60 Query: 907 ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV 1086 ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV Sbjct: 61 ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV 120 Query: 1087 KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASXXXXXXXX 1266 KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDAS Sbjct: 121 KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASFFHLLRFF 180 Query: 1267 XXXXSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV 1446 SNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV Sbjct: 181 LYHFSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV 240 Query: 1447 FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY 1626 FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY Sbjct: 241 FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY 300 Query: 1627 FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK 1806 FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK Sbjct: 301 FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK 360 Query: 1807 KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS 1986 KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS Sbjct: 361 KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS 420 Query: 1987 KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGXXXXXXXXXXXXXXXXXXXXPRTS 2166 KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSG PRTS Sbjct: 421 KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGSEELLEEFFTEEEEILSLIFPRTS 480 Query: 2167 STLQRLHRNRIWYLDILFSNDLVNHE 2244 STLQRLHRNRIWYLDILFSNDLVNHE Sbjct: 481 STLQRLHRNRIWYLDILFSNDLVNHE 506 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Jun 4, 2009 5:40 PM Number of letters in database: 3,078,807,967 Number of sequences in database: 8,994,603 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 8994603 Number of Hits to DB: 41,405,514,078 Number of extensions: 917198245 Number of successful extensions: 2155728 Number of sequences better than 1.0e-04: 27270 Number of HSP's gapped: 2094143 Number of HSP's successfully gapped: 28318 Length of database: 3,078,807,967 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 33 (17.3 bits)