BLASTX 2.2.22+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 8,994,603 sequences; 3,078,807,967 total letters Query= gi|4104054|gb|AH007193.1|SEG_CVIGS Centaurea vallesiaca 18S ribosomal RNA gene, partial sequence Length=1002 Score E Sequences producing significant alignments: (Bits) Value gb|ABR25402.1| unknown [Oryza sativa (indica cultivar-group)] 54.3 2e-05 >gb|ABR25402.1| unknown [Oryza sativa (indica cultivar-group)] Length=26 Score = 54.3 bits (129), Expect = 2e-05 Identities = 24/26 (92%), Positives = 25/26 (96%), Gaps = 0/26 (0%) Frame = +2 Query 911 HMLVSKIKPCMCKYEQIQTVKLRMAH 988 HMLVSKIKPCMCKYE I+TVKLRMAH Sbjct 1 HMLVSKIKPCMCKYELIRTVKLRMAH 26 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 367397307882 Query= gi|4218935|gb|AF074388.1|AF074388 Sambucus nigra hevein-like protein HLPf gene, partial cds Length=2050 Score E Sequences producing significant alignments: (Bits) Value gb|AAD12237.1| hevein-like protein HLPf [Sambucus nigra] 410 3e-112 gb|AAD11408.1| hevein-like protein [Sambucus nigra] 406 5e-111 gb|AAD11406.1| hevein-like protein [Sambucus nigra] 406 5e-111 gb|AAD11407.1| hevein-like protein [Sambucus nigra] 395 7e-108 gb|AAL30421.1|AF434174_1 hevein-like protein [Sambucus nigra] 384 2e-104 gb|AAL30422.1|AF434175_1 hevein-like protein [Sambucus nigra] 279 9e-73 gb|AAO17294.1| chitinase [Ficus carica] 189 7e-46 gb|ACM45713.1| class I chitinase [Pyrus pyrifolia] 185 2e-44 dbj|BAB40817.2| endochitinase MCHT-2 [Cucumis melo] 181 2e-43 gb|ABB86300.1| chitinase [Ficus awkeotsang] 181 3e-43 >gb|AAD12237.1| hevein-like protein HLPf [Sambucus nigra] Length=333 Score = 410 bits (1053), Expect = 3e-112 Identities = 199/238 (83%), Positives = 200/238 (84%), Gaps = 33/238 (13%) Frame = +1 Query 1 MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE 180 MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE Sbjct 1 MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE 60 Query 181 DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF 360 DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF Sbjct 61 DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF 120 Query 361 ITAARSFPGFCTSGDVATRKREPAAFLsqtsqattg*ssNLNIYLC*EIISTIYICFEIN 540 ITAARSFPGFCTSGDVATRKREPAAFLS Sbjct 121 ITAARSFPGFCTSGDVATRKREPAAFLS-------------------------------- 148 Query 541 LRTWMLGVGGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT 714 +T GGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT Sbjct 149 -QTSQATTGGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT 205 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 967993058520 Query= gi|5690369|gb|AF158246.1|AF158246 Cricetulus griseus glucose phosphate isomerase (GPI) gene, partial intron sequence Length=550 ***** No hits found ***** Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 108443629616 Query= gi|5049839|gb|AI730987.1|AI730987 BNLGHi8354 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to TUBULIN BETA-1 CHAIN gi|486734|pir|S35142 tubulin beta chain - white lupine gi|402636 (X70184) Beta tubulin 1 [Lupinus albus], mRNA sequence Length=655 Score E Sequences producing significant alignments: (Bits) Value gb|ABY86655.1| beta-tubulin 4 [Gossypium hirsutum] 408 2e-112 gb|EEF51386.1| tubulin beta chain, putative [Ricinus communis] 406 7e-112 ref|NP_568437.1| TUB8 (tubulin beta-8) [Arabidopsis thaliana] >s... 405 2e-111 ref|XP_002271992.1| PREDICTED: hypothetical protein [Vitis vinif... 402 1e-110 gb|AAK96884.1| beta tubulin [Arabidopsis thaliana] >gb|AAM10035.... 402 1e-110 ref|XP_002267380.1| PREDICTED: hypothetical protein [Vitis vinif... 402 1e-110 sp|P37392.1|TBB1_LUPAL RecName: Full=Tubulin beta-1 chain; AltNa... 402 1e-110 ref|XP_002313404.1| tubulin, beta chain [Populus trichocarpa] >g... 401 2e-110 gb|EEF51167.1| tubulin beta chain, putative [Ricinus communis] 400 4e-110 ref|XP_002299541.1| tubulin, beta chain [Populus trichocarpa] >g... 400 4e-110 >gb|ABY86655.1| beta-tubulin 4 [Gossypium hirsutum] Length=448 Score = 408 bits (1048), Expect = 2e-112 Identities = 196/201 (97%), Positives = 197/201 (98%), Gaps = 0/201 (0%) Frame = +2 Query 50 MREILHIQAGQCGNQIGANFWEVVCAEHGINSTGRYQGDNDLQLERVNVYYNEASCGRFV 229 MREILHIQAGQCGNQIGA FWEVVCAEHGI+STGRYQGDNDLQLERVNVYYNEASCGRFV Sbjct 1 MREILHIQAGQCGNQIGAKFWEVVCAEHGIDSTGRYQGDNDLQLERVNVYYNEASCGRFV 60 Query 230 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSXLDVV 409 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDS LDVV Sbjct 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120 Query 410 RKEAENCDCLQGFQVCHSLGRGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 589 RKEAENCDCLQGFQVCHSLG GTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV Sbjct 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180 Query 590 EPYNATLSVHXLVENADECMV 652 EPYNATLSVH LVENADECMV Sbjct 181 EPYNATLSVHQLVENADECMV 201 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 165344802738 Query= gi|5052071|gb|AF067555.1|AF067555 Phlox stansburyi internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length=623 Score E Sequences producing significant alignments: (Bits) Value dbj|BAE98425.1| hypothetical protein [Arabidopsis thaliana] 93.6 6e-19 gb|EEH50844.1| predicted protein [Micromonas pusilla CCMP1545] 96.3 2e-18 ref|XP_001786502.1| predicted protein [Physcomitrella patens sub... 75.1 4e-12 ref|XP_001786120.1| predicted protein [Physcomitrella patens sub... 73.2 2e-11 ref|XP_001786259.1| predicted protein [Physcomitrella patens sub... 73.2 2e-11 ref|XP_001786759.1| predicted protein [Physcomitrella patens sub... 73.2 2e-11 ref|XP_001786133.1| predicted protein [Physcomitrella patens sub... 70.9 8e-11 sp|Q8TGM5|ART3_YEAST Uncharacterized protein ART3 (Antisense to ... 58.9 3e-07 ref|XP_001786634.1| predicted protein [Physcomitrella patens sub... 57.4 9e-07 ref|XP_453851.1| unnamed protein product [Kluyveromyces lactis] 56.2 2e-06 >dbj|BAE98425.1| hypothetical protein [Arabidopsis thaliana] Length=80 Score = 93.6 bits (231), Expect(2) = 6e-19 Identities = 42/48 (87%), Positives = 45/48 (93%), Gaps = 1/48 (2%) Frame = +1 Query 283 MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHVCLGVSHRVAPNP 426 MKNVAKCDTWCELQNPVNHRVFERKLRPKP GRGHVCLGV++R P+P Sbjct 1 MKNVAKCDTWCELQNPVNHRVFERKLRPKPSGRGHVCLGVTNR-RPSP 47 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 147032237429 Query= gi|3176602|gb|U78617.1|LOU78617 Lathyrus odoratus phytochrome A (PHYA) gene, partial cds Length=309 Score E Sequences producing significant alignments: (Bits) Value gb|AAC18749.1| phytochrome A [Lathyrus odoratus] 213 4e-54 sp|P15001.1|PHYA_PEA RecName: Full=Phytochrome A >gb|AAA33682.1|... 208 1e-52 sp|P93673.1|PHYA_LATSA RecName: Full=Phytochrome type A >gb|AAB4... 208 1e-52 gb|AAC18745.1| phytochrome A [Lennea melanocarpa] >gb|AAC18746.1... 207 2e-52 gb|AAC18675.1| phytochrome A [Sophora affinis] 207 2e-52 gb|AAC18670.1| phytochrome A [Myrospermum sousanum] 206 5e-52 gb|AAC18750.1| phytochrome A [Hybosema robustum] 206 6e-52 gb|AAC18668.1| phytochrome A [Cyclolobium nutans] 206 8e-52 gb|AAC18709.1| phytochrome A [Millettia richardiana] 205 1e-51 gb|AAC18693.1| phytochrome A [Callerya atropurpurea] 204 2e-51 >gb|AAC18749.1| phytochrome A [Lathyrus odoratus] Length=103 Score = 213 bits (543), Expect = 4e-54 Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%) Frame = +1 Query 1 QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA 180 QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA Sbjct 1 QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA 60 Query 181 SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV 309 SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV Sbjct 61 SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV 103 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 75367093081 Query= gi|5817701|gb|AF142731.1|AF142731 Wisteria frutescens maturase-like protein (matK) gene, complete cds; chloroplast gene for chloroplast product Length=2551 Score E Sequences producing significant alignments: (Bits) Value sp|Q9TKP6.1|MATK_WISFR RecName: Full=Maturase K; AltName: Full=I... 948 0.0 gb|ACB58148.1| maturase K [Wisteria frutescens] 946 0.0 gb|ACB58149.1| maturase K [Wisteria frutescens] >gb|ACB58150.1| ... 945 0.0 gb|ACB58142.1| maturase K [Callerya megasperma] 944 0.0 gb|AAD52903.1|AF142732_1 maturase-like protein [Wisteria sinensi... 936 0.0 gb|ACB58143.1| maturase K [Wisteria brachybotrys] 928 0.0 gb|AAD52904.1|AF142733_1 maturase-like protein [Callerya reticul... 925 0.0 gb|AAD52905.1|AF142734_1 maturase-like protein [Callerya atropur... 890 0.0 gb|ABS20107.1| maturase-like protein [Astragalus uliginosus] 887 0.0 dbj|BAF57483.1| maturase [Glycyrrhiza uralensis] >dbj|BAF57484.1... 887 0.0 >sp|Q9TKP6.1|MATK_WISFR RecName: Full=Maturase K; AltName: Full=Intron maturase gb|AAD52902.1|AF142731_1 maturase-like protein [Wisteria frutescens] Length=506 Score = 948 bits (2451), Expect = 0.0 Identities = 506/506 (100%), Positives = 506/506 (100%), Gaps = 0/506 (0%) Frame = +1 Query 727 MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL 906 MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL Sbjct 1 MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL 60 Query 907 ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV 1086 ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV Sbjct 61 ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV 120 Query 1087 KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASffhllrff 1266 KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASFFHLLRFF Sbjct 121 KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASFFHLLRFF 180 Query 1267 lyhfSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV 1446 LYHFSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV Sbjct 181 LYHFSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV 240 Query 1447 FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY 1626 FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY Sbjct 241 FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY 300 Query 1627 FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK 1806 FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK Sbjct 301 FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK 360 Query 1807 KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS 1986 KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS Sbjct 361 KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS 420 Query 1987 KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGseelleeffteeeeilslifPRTS 2166 KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGSEELLEEFFTEEEEILSLIFPRTS Sbjct 421 KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGSEELLEEFFTEEEEILSLIFPRTS 480 Query 2167 STLQRLHRNRIWYLDILFSNDLVNHE 2244 STLQRLHRNRIWYLDILFSNDLVNHE Sbjct 481 STLQRLHRNRIWYLDILFSNDLVNHE 506 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1251086325060 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Jun 4, 2009 5:41 PM Number of letters in database: 3,078,807,967 Number of sequences in database: 8,994,603 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 12 Window for multiple hits: 40