########################################
# Program: matcher
# Rundate: Tue  8 Dec 2009 12:01:34
# Commandline: matcher
#    [-asequence] hba_human.fasta
#    [-bsequence] hbb_human.fasta
#    [-outfile] matcher_pair.txt
#    -alternatives 5
#    -aformat pair
#    -sprotein
# Align_format: pair
# Report_file: matcher_pair.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 145
# Identity:      63/145 (43.4%)
# Similarity:    88/145 (60.7%)
# Gaps:           8/145 ( 5.5%)
# Score: 264
# 
#
#=======================================

HBA_HUMAN          3 LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH     51
                     |:|.:|:.|.|.||||  :..|.|.|||.|:.:.:|.|:.:|..| |||.
HBB_HUMAN          4 LTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLST     51

HBA_HUMAN         52 -----GSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDP     96
                          |:.:||.|||||..|.::.:||:|::....:.||:||..||.|||
HBB_HUMAN         52 PDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDP    101

HBA_HUMAN         97 VNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY    141
                     .||:||.:.|:..||.|...||||.|.|:..|.:|.|:..|..||
HBB_HUMAN        102 ENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY    146


#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 13
# Identity:       6/13 (46.2%)
# Similarity:     9/13 (69.2%)
# Gaps:           0/13 ( 0.0%)
# Score: 32
# 
#
#=======================================

HBA_HUMAN         61 KKVADALTNAVAH     73
                     :||...:.||:||
HBB_HUMAN        132 QKVVAGVANALAH    144


#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 18
# Identity:       7/18 (38.9%)
# Similarity:    10/18 (55.6%)
# Gaps:           0/18 ( 0.0%)
# Score: 28
# 
#
#=======================================

HBA_HUMAN         91 KLRVDPVNFKLLSHCLLV    108
                     |:.||.|..:.|...|:|
HBB_HUMAN         18 KVNVDEVGGEALGRLLVV     35


#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 10
# Identity:       6/10 (60.0%)
# Similarity:     6/10 (60.0%)
# Gaps:           0/10 ( 0.0%)
# Score: 23
# 
#
#=======================================

HBA_HUMAN         81 LSALSDLHAH     90
                     |.|.||..||
HBB_HUMAN         69 LGAFSDGLAH     78


#=======================================
#
# Aligned_sequences: 2
# 1: HBA_HUMAN
# 2: HBB_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 10
# Identity:       6/10 (60.0%)
# Similarity:     8/10 (80.0%)
# Gaps:           0/10 ( 0.0%)
# Score: 23
# 
#
#=======================================

HBA_HUMAN         11 VKAAWGKVGA     20
                     |:||:.||.|
HBB_HUMAN        127 VQAAYQKVVA    136


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