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# Program: water
# Rundate: Sat Apr 04 2009 22:08:44
# Commandline: water
#    -asequence asis:ACACACTCACACACACTTGGTCAGAGATGCTGTGCTTCTTGGAAGCAAGGNCTCAAAGGCAAGGTGCACGCAGAGGGACGTTTGAGTCTGGGATGAAGCATGTNCGTATTATTTATATGATGGAATTTCACGTTTTTATG
#    -bsequence asis:CGTTTGAGTACTGGGATG
#    -gapopen 10
#    -gapextend 0.5
#    -filter
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: asis
# 2: asis
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 18
# Identity:      17/18 (94.4%)
# Similarity:    17/18 (94.4%)
# Gaps:           1/18 ( 5.6%)
# Score: 75.0
# 
#
#=======================================

asis              79 CGTTTGAGT-CTGGGATG     95
                     ||||||||| ||||||||
asis               1 CGTTTGAGTACTGGGATG     18


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