# /opt/fasta/fasta34 -p -m 10 -Q -b 2 -E 0.5 NC_009653.faa NC_002127.faa
FASTA searches a protein or DNA sequence data bank
 version 34.26 January 12, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query library NC_009653.faa vs NC_002127.faa library
searching NC_002127.faa library

  1>>>gi|152973837|ref|YP_001338874.1| hypothetical protein KPN_pKPN7p10262 [Klebsiella pneumoniae subsp. pneumonia 183 aa - 183 aa
 vs  NC_002127.faa library

    579 residues in     3 sequences
 Altschul/Gish params: n0: 183 Lambda: 0.158 K: 0.019 H: 0.100

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
 Scan time:  0.000
The best scores are:                                      opt bits E(3)
gi|10955263|ref|NP_052604.1| plasmid mobilization  ( 107)   45 17.7    0.26

>>>gi|152973837|ref|YP_001338874.1|, 183 aa vs NC_002127.faa library
; pg_name: /opt/fasta/fasta34
; pg_ver: 34.26
; pg_argv: /opt/fasta/fasta34 -p -m 10 -Q -b 2 -E 0.5 NC_009653.faa NC_002127.faa
; pg_name: FASTA
; pg_ver: 3.5 Sept 2006
; pg_matrix: BL50 (15:-5)
; pg_open-ext: -10 -2
; pg_ktup: 2
; pg_optcut: 24
; pg_cgap: 36
; mp_extrap: 60000 3
; mp_stats: Altschul/Gish params: n0: 183 Lambda: 0.158 K: 0.019 H: 0.100
; mp_KS: -0.0000 (N=0) at 8159228
>>gi|10955263|ref|NP_052604.1| plasmid mobilization [Escherichia coli O157:H7 str. Sakai]
; fa_frame: f
; fa_initn:  43
; fa_init1:  43
; fa_opt:  45
; fa_z-score: 64.1
; fa_bits: 17.7
; fa_expect:   0.26
; sw_score: 59
; sw_ident: 0.255
; sw_sim: 0.673
; sw_overlap: 55
>gi|152973837 ..
; sq_len: 183
; sq_offset: 1
; sq_type: p
; al_start: 87
; al_stop: 141
; al_display_start: 57
VLKRKIRAKSVNDKGLSNLYSFEPLIEKLLISISNNKDQYEELQKEQGER
DLKTVDQLVRIAAAGGGLRLSASTKTVDQLVRIAAAAGNSITPNKAKLVL
FDLESKTVDELVRIAAAGKG
>gi|10955263|ref|NP_052604.1| ..
; sq_len: 107
; sq_type: p
; al_start: 18
; al_stop: 69
; al_display_start: 1
-------------MTKRSGSNTRRRAISRPVRLTAEEDQ--EIRKRAAEC
G-KTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDR
EYAEVLIAITEYHRALLSRL
  2>>>gi|152973838|ref|YP_001338875.1| hypothetical protein KPN_pKPN7p10263 [Klebsiella pneumoniae subsp. pneumonia 76 aa - 76 aa
 vs  NC_002127.faa library

    579 residues in     3 sequences
 Altschul/Gish params: n0: 76 Lambda: 0.158 K: 0.019 H: 0.100

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
 Scan time:  0.000
!! No library sequences with E() < 0.5
  3>>>gi|152973839|ref|YP_001338876.1| hypothetical protein KPN_pKPN7p10264 [Klebsiella pneumoniae subsp. pneumonia 112 aa - 112 aa
 vs  NC_002127.faa library

    579 residues in     3 sequences
 Altschul/Gish params: n0: 112 Lambda: 0.158 K: 0.019 H: 0.100

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
 Scan time:  0.000
!! No library sequences with E() < 0.5
  4>>>gi|152973840|ref|YP_001338877.1| RNA one modulator-like protein [Klebsiella pneumoniae subsp. pneumoniae  63 aa - 63 aa
 vs  NC_002127.faa library

    579 residues in     3 sequences
 Altschul/Gish params: n0: 63 Lambda: 0.158 K: 0.019 H: 0.100

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
 Scan time:  0.000
The best scores are:                                      opt bits E(3)
gi|10955265|ref|NP_052606.1| hypothetical protein  ( 346)   38 19.2    0.11

>>>gi|152973840|ref|YP_001338877.1|, 63 aa vs NC_002127.faa library
; pg_name: /opt/fasta/fasta34
; pg_ver: 34.26
; pg_argv: /opt/fasta/fasta34 -p -m 10 -Q -b 2 -E 0.5 NC_009653.faa NC_002127.faa
; pg_name: FASTA
; pg_ver: 3.5 Sept 2006
; pg_matrix: BL50 (15:-5)
; pg_open-ext: -10 -2
; pg_ktup: 2
; pg_optcut: 24
; pg_cgap: 36
; mp_extrap: 60000 3
; mp_stats: Altschul/Gish params: n0: 63 Lambda: 0.158 K: 0.019 H: 0.100
; mp_KS: -0.0000 (N=0) at 8159228
>>gi|10955265|ref|NP_052606.1| hypothetical protein pOSAK1_03 [Escherichia coli O157:H7 str. Sakai]
; fa_frame: f
; fa_initn:  35
; fa_init1:  35
; fa_opt:  38
; fa_z-score: 71.3
; fa_bits: 19.2
; fa_expect:   0.11
; sw_score: 38
; sw_ident: 0.364
; sw_sim: 0.636
; sw_overlap: 22
>gi|152973840 ..
; sq_len: 63
; sq_offset: 1
; sq_type: p
; al_start: 43
; al_stop: 63
; al_display_start: 13
KFIQHQSLLLLEKLNELDLDAEADLCEKLHDDAEHLFRTLSSR-LDALQD
GN
>gi|10955265|ref|NP_052606.1| ..
; sq_len: 346
; sq_type: p
; al_start: 102
; al_stop: 123
; al_display_start: 72
YFDEIALIIKENCLYSDTKNFEYTIPKFSDDDRANLFEFLSEEGITITED
NNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIASLINDFMCS
ILNMKEIVEQKNKEFNVDIK
  5>>>gi|152973841|ref|YP_001338878.1| Excl1 protein [Klebsiella pneumoniae subsp. pneumoniae  133 aa - 133 aa
 vs  NC_002127.faa library

    579 residues in     3 sequences
 Altschul/Gish params: n0: 133 Lambda: 0.158 K: 0.019 H: 0.100

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
 Scan time:  0.000
The best scores are:                                      opt bits E(3)
gi|10955264|ref|NP_052605.1| hypothetical protein  ( 126)   57 20.4   0.036

>>>gi|152973841|ref|YP_001338878.1|, 133 aa vs NC_002127.faa library
; pg_name: /opt/fasta/fasta34
; pg_ver: 34.26
; pg_argv: /opt/fasta/fasta34 -p -m 10 -Q -b 2 -E 0.5 NC_009653.faa NC_002127.faa
; pg_name: FASTA
; pg_ver: 3.5 Sept 2006
; pg_matrix: BL50 (15:-5)
; pg_open-ext: -10 -2
; pg_ktup: 2
; pg_optcut: 24
; pg_cgap: 36
; mp_extrap: 60000 3
; mp_stats: Altschul/Gish params: n0: 133 Lambda: 0.158 K: 0.019 H: 0.100
; mp_KS: -0.0000 (N=0) at 8159228
>>gi|10955264|ref|NP_052605.1| hypothetical protein pOSAK1_02 [Escherichia coli O157:H7 str. Sakai]
; fa_frame: f
; fa_initn:  37
; fa_init1:  37
; fa_opt:  57
; fa_z-score: 80.0
; fa_bits: 20.4
; fa_expect:  0.036
; sw_score: 57
; sw_ident: 0.254
; sw_sim: 0.651
; sw_overlap: 63
>gi|152973841 ..
; sq_len: 133
; sq_offset: 1
; sq_type: p
; al_start: 49
; al_stop: 109
; al_display_start: 19
TLHRLIKAGDLSTCSGERNAKMVDTSELLRVFGSFEQPKGEHLSGQVSEQ
--RDTAFADQNEQVIRHLKQEIEHLNTLLLSKDSHIDSLKQAMLLLENHQ
AKLTESPAPWWKFWKKS
>gi|10955264|ref|NP_052605.1| ..
; sq_len: 126
; sq_type: p
; al_start: 66
; al_stop: 124
; al_display_start: 36
KIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFN---GEKFSSYTLNK
VTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSF-ALKKGIPI
>>><<<


567 residues in 5 query   sequences
579 residues in 3 library sequences
 Scomplib [34.26]
 start: Fri May 23 14:15:30 2008 done: Fri May 23 14:15:30 2008
 Total Scan time:  0.000 Total Display time:  0.000

Function used was FASTA [version 34.26 January 12, 2007]