******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 3.0 (Release date: 2004/08/18 09:07:01) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.sdsc.edu. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.sdsc.edu. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= adh.s ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 2BHD_STREX 1.0000 255 3BHD_COMTE 1.0000 253 ADH_DROME 1.0000 255 AP27_MOUSE 1.0000 244 BA72_EUBSP 1.0000 249 BDH_HUMAN 1.0000 343 BPHB_PSEPS 1.0000 275 BUDC_KLETE 1.0000 241 DHES_HUMAN 1.0000 327 DHGB_BACME 1.0000 262 DHII_HUMAN 1.0000 292 DHMA_FLAS1 1.0000 270 ENTA_ECOLI 1.0000 248 FIXR_BRAJA 1.0000 278 GUTD_ECOLI 1.0000 259 HDE_CANTR 1.0000 906 HDHA_ECOLI 1.0000 255 LIGD_PSEPA 1.0000 305 NODG_RHIME 1.0000 245 RIDH_KLEAE 1.0000 249 YINL_LISMO 1.0000 248 YRTP_BACSU 1.0000 238 CSGA_MYXXA 1.0000 166 DHB2_HUMAN 1.0000 387 DHB3_HUMAN 1.0000 310 DHCA_HUMAN 1.0000 276 FABI_ECOLI 1.0000 262 FVT1_HUMAN 1.0000 332 HMTR_LEIMA 1.0000 287 MAS1_AGRRA 1.0000 476 PCR_PEA 1.0000 399 RFBB_NEIGO 1.0000 346 YURA_MYXXA 1.0000 258 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme adh.s -mod oops -protein -nmotifs 2 model: mod= oops nmotifs= 2 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 33 maxsites= 33 wnsites= 0.8 theta: prob= 1 spmap= pam spfuzz= 120 em: prior= dmix b= 0 maxiter= 50 distance= 1e-05 data: n= 9996 N= 33 sample: seed= 0 seqfrac= 1 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052 L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083 W 0.010 Y 0.027 Background letter frequencies (from dataset with add-one prior applied): A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052 L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083 W 0.010 Y 0.027 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 29 sites = 33 llr = 1118 E-value = 3.6e-165 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :162:56112:1:215:::4:::::::11 pos.-specific C :1:::::::::::1:::::::::::1:1: probability D ::::::::1:::1::::2::::::::::: matrix E ::::::::1:::21:::5:111::::::: F :::::31:::2:::::1:::::::::::: G :2:::13::4:::1:1:::11:5:1:11: H :::::::::1::1:::1::::1::::::: I :::::::11:::::::::1::::5:2:13 K ::::9:::1:::2:::1::121::1:1:: L :::::::31:6:1:5:215::1:::::12 M ::1::::1:2:1::2:1:1:::::::::: N :::::::::1::::::::::::2:1:41: P ::::::::::::::::::::3:::::::: Q ::::::::::::1::11:::11::::::: R ::::::::2:::3::22::21:1:4:1:: S :426::1:11:213:::::1:11:::21: T :1:2::::1::3:1::::::11::1:11: V :::::::41::2:1::1:1::::316123 W :::::1::::::::::::::::::::::: Y 9:::::::::::::::::2::2::::::: bits 6.7 6.0 5.4 4.7 * Information 4.0 * * content 3.4 * * (48.9 bits) 2.7 * ** * 2.0 * **** * * * * * 1.3 ******** ******* ** * ***** * 0.7 ***************************** 0.0 ----------------------------- Multilevel YSASKAAVxGLTRSLAxELAPxGIRVNVV consensus FGL FSE MR D V I sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- YRTP_BACSU 155 1.64e-22 GQRGAAVTSA YSASKFAVLGLTESLMQEVRKHNIRVSAL TPSTVASDMS AP27_MOUSE 149 6.32e-22 AHVTFPNLIT YSSTKGAMTMLTKAMAMELGPHKIRVNSV NPTVVLTDMG NODG_RHIME 152 1.13e-21 GAIGNPGQTN YCASKAGMIGFSKSLAQEIATRNITVNCV APGFIESAMT BUDC_KLETE 152 4.04e-21 GHVGNPELAV YSSSKFAVRGLTQTAARDLAPLGITVNGF CPGIVKTPMW FIXR_BRAJA 189 6.12e-21 SRVHPFAGSA YATSKAALASLTRELAHDYAPHGIRVNAI APGEIRTDML DHGB_BACME 160 7.52e-20 WKIPWPLFVH YAASKGGMKLMTETLALEYAPKGIRVNNI GPGAINTPIN HMTR_LEIMA 193 3.35e-19 TNQPLLGYTI YTMAKGALEGLTRSAALELAPLQIRVNGV GPGLSVLVDD YURA_MYXXA 160 4.82e-19 AGFRGLPATR YSASKAFLSTFMESLRVDLRGTGVRVTCI YPGFVKSELT GUTD_ECOLI 154 4.82e-19 GKVGSKHNSG YSAAKFGGVGLTQSLALDLAEYGITVHSL MLGNLLKSPM 2BHD_STREX 152 1.11e-18 GLMGLALTSS YGASKWGVRGLSKLAAVELGTDRIRVNSV HPGMTYTPMT HDHA_ECOLI 159 1.25e-18 AENKNINMTS YASSKAAASHLVRNMAFDLGEKNIRVNGI APGAILTDAL DHB2_HUMAN 232 2.23e-18 GGAPMERLAS YGSSKAAVTMFSSVMRLELSKWGIKVASI QPGGFLTNIA DHMA_FLAS1 165 5.53e-18 SFMAEPEAAA YVAAKGGVAMLTRAMAVDLARHGILVNMI APGPVDVTGN HDE_CANTR 467 9.65e-18 GIYGNFGQAN YSSSKAGILGLSKTMAIEGAKNNIKVNIV APHAETAMTL FVT1_HUMAN 186 2.86e-17 GQLGLFGFTA YSASKFAIRGLAEALQMEVKPYNVYITVA YPPDTDTPGF BDH_HUMAN 208 8.20e-17 GRMANPARSP YCITKFGVEAFSDCLRYEMYPLGVKVSVV EPGNFIAATS RIDH_KLEAE 160 9.09e-17 GVVPVIWEPV YTASKFAVQAFVHTTRRQVAQYGVRVGAV LPGPVVTALL DHES_HUMAN 155 1.37e-16 GLMGLPFNDV YCASKFALEGLCESLAVLLLPFGVHLSLI ECGPVHTAFM BA72_EUBSP 157 2.52e-16 GIFGSLSGVG YPASKASVIGLTHGLGREIIRKNIRVVGV APGVVNTDMT LIGD_PSEPA 157 1.21e-15 GFMGSALAGP YSAAKAASINLMEGYRQGLEKYGIGVSVC TPANIKSNIA DHII_HUMAN 183 1.61e-15 GKVAYPMVAA YSASKFALDGFFSSIRKEYSVSRVNVSIT LCVLGLIDTE ENTA_ECOLI 144 1.77e-15 AHTPRIGMSA YGASKAALKSLALSVGLELAGSGVRCNVV SPGSTDTDMQ 3BHD_COMTE 151 7.81e-15 SWLPIEQYAG YSASKAAVSALTRAAALSCRKQGYAIRVN SIHPDGIYTP DHB3_HUMAN 198 8.55e-15 ALFPWPLYSM YSASKAFVCAFSKALQEEYKAKEVIIQVL TPYAVSTAMT RFBB_NEIGO 165 1.47e-14 ETTPYAPSSP YSASKAAADHLVRAWQRTYRLPSIVSNCS NNYGPRQFPE YINL_LISMO 154 3.24e-14 GLKAYPGGAV YGATKWAVRDLMEVLRMESAQEGTNIRTA TIYPAAINTE BPHB_PSEPS 153 1.80e-12 GFYPNGGGPL YTAAKQAIVGLVRELAFELAPYVRVNGVG PGGMNSDMRG CSGA_MYXXA 88 2.10e-12 AANTDGGAYA YRMSKAALNMAVRSMSTDLRPEGFVTVLL HPGWVQTDMG FABI_ECOLI 159 4.15e-12 AERAIPNYNV MGLAKASLEANVRYMANAMGPEGVRVNAI SAGPIRTLAA ADH_DROME 152 5.20e-12 GFNAIYQVPV YSGTKAAVVNFTSSLAKLAPITGVTAYTV NPGITRTTLV DHCA_HUMAN 193 4.80e-10 HQKEGWPSSA YGVTKIGVTVLSRIHARKLSEQRKGDKIL LNACCPGWVR PCR_PEA 26 2.77e-08 PKEGKIGASL KDSTLFGVSSLSDSLKGDFTSSALRCKEL RQKVGAVRAE MAS1_AGRRA 349 5.72e-08 VDYQRFHLQW YINCVAPLRMTELCLPHLYETGSGRIVNI NSMSGQRVLN -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YRTP_BACSU 1.6e-22 154_[1]_55 AP27_MOUSE 6.3e-22 148_[1]_67 NODG_RHIME 1.1e-21 151_[1]_65 BUDC_KLETE 4e-21 151_[1]_61 FIXR_BRAJA 6.1e-21 188_[1]_61 DHGB_BACME 7.5e-20 159_[1]_74 HMTR_LEIMA 3.4e-19 192_[1]_66 YURA_MYXXA 4.8e-19 159_[1]_70 GUTD_ECOLI 4.8e-19 153_[1]_77 2BHD_STREX 1.1e-18 151_[1]_75 HDHA_ECOLI 1.2e-18 158_[1]_68 DHB2_HUMAN 2.2e-18 231_[1]_127 DHMA_FLAS1 5.5e-18 164_[1]_77 HDE_CANTR 9.7e-18 466_[1]_411 FVT1_HUMAN 2.9e-17 185_[1]_118 BDH_HUMAN 8.2e-17 207_[1]_107 RIDH_KLEAE 9.1e-17 159_[1]_61 DHES_HUMAN 1.4e-16 154_[1]_144 BA72_EUBSP 2.5e-16 156_[1]_64 LIGD_PSEPA 1.2e-15 156_[1]_120 DHII_HUMAN 1.6e-15 182_[1]_81 ENTA_ECOLI 1.8e-15 143_[1]_76 3BHD_COMTE 7.8e-15 150_[1]_74 DHB3_HUMAN 8.6e-15 197_[1]_84 RFBB_NEIGO 1.5e-14 164_[1]_153 YINL_LISMO 3.2e-14 153_[1]_66 BPHB_PSEPS 1.8e-12 152_[1]_94 CSGA_MYXXA 2.1e-12 87_[1]_50 FABI_ECOLI 4.2e-12 158_[1]_75 ADH_DROME 5.2e-12 151_[1]_75 DHCA_HUMAN 4.8e-10 192_[1]_55 PCR_PEA 2.8e-08 25_[1]_345 MAS1_AGRRA 5.7e-08 348_[1]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=29 seqs=33 YRTP_BACSU ( 155) YSASKFAVLGLTESLMQEVRKHNIRVSAL 1 AP27_MOUSE ( 149) YSSTKGAMTMLTKAMAMELGPHKIRVNSV 1 NODG_RHIME ( 152) YCASKAGMIGFSKSLAQEIATRNITVNCV 1 BUDC_KLETE ( 152) YSSSKFAVRGLTQTAARDLAPLGITVNGF 1 FIXR_BRAJA ( 189) YATSKAALASLTRELAHDYAPHGIRVNAI 1 DHGB_BACME ( 160) YAASKGGMKLMTETLALEYAPKGIRVNNI 1 HMTR_LEIMA ( 193) YTMAKGALEGLTRSAALELAPLQIRVNGV 1 YURA_MYXXA ( 160) YSASKAFLSTFMESLRVDLRGTGVRVTCI 1 GUTD_ECOLI ( 154) YSAAKFGGVGLTQSLALDLAEYGITVHSL 1 2BHD_STREX ( 152) YGASKWGVRGLSKLAAVELGTDRIRVNSV 1 HDHA_ECOLI ( 159) YASSKAAASHLVRNMAFDLGEKNIRVNGI 1 DHB2_HUMAN ( 232) YGSSKAAVTMFSSVMRLELSKWGIKVASI 1 DHMA_FLAS1 ( 165) YVAAKGGVAMLTRAMAVDLARHGILVNMI 1 HDE_CANTR ( 467) YSSSKAGILGLSKTMAIEGAKNNIKVNIV 1 FVT1_HUMAN ( 186) YSASKFAIRGLAEALQMEVKPYNVYITVA 1 BDH_HUMAN ( 208) YCITKFGVEAFSDCLRYEMYPLGVKVSVV 1 RIDH_KLEAE ( 160) YTASKFAVQAFVHTTRRQVAQYGVRVGAV 1 DHES_HUMAN ( 155) YCASKFALEGLCESLAVLLLPFGVHLSLI 1 BA72_EUBSP ( 157) YPASKASVIGLTHGLGREIIRKNIRVVGV 1 LIGD_PSEPA ( 157) YSAAKAASINLMEGYRQGLEKYGIGVSVC 1 DHII_HUMAN ( 183) YSASKFALDGFFSSIRKEYSVSRVNVSIT 1 ENTA_ECOLI ( 144) YGASKAALKSLALSVGLELAGSGVRCNVV 1 3BHD_COMTE ( 151) YSASKAAVSALTRAAALSCRKQGYAIRVN 1 DHB3_HUMAN ( 198) YSASKAFVCAFSKALQEEYKAKEVIIQVL 1 RFBB_NEIGO ( 165) YSASKAAADHLVRAWQRTYRLPSIVSNCS 1 YINL_LISMO ( 154) YGATKWAVRDLMEVLRMESAQEGTNIRTA 1 BPHB_PSEPS ( 153) YTAAKQAIVGLVRELAFELAPYVRVNGVG 1 CSGA_MYXXA ( 88) YRMSKAALNMAVRSMSTDLRPEGFVTVLL 1 FABI_ECOLI ( 159) MGLAKASLEANVRYMANAMGPEGVRVNAI 1 ADH_DROME ( 152) YSGTKAAVVNFTSSLAKLAPITGVTAYTV 1 DHCA_HUMAN ( 193) YGVTKIGVTVLSRIHARKLSEQRKGDKIL 1 PCR_PEA ( 26) KDSTLFGVSSLSDSLKGDFTSSALRCKEL 1 MAS1_AGRRA ( 349) YINCVAPLRMTELCLPHLYETGSGRIVNI 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.09755 E= 3.6e-165 -716 -497 -698 -691 -172 -730 -304 -562 -80 -507 12 -550 -661 -513 -563 -605 -625 -609 -217 508 -51 240 -90 -249 -334 53 -232 -106 -219 -337 -278 -209 -72 -192 -79 276 81 -153 -332 -306 257 -64 -390 -343 -320 -160 -326 -144 -343 -193 26 -120 -436 -313 -349 86 -117 -123 -309 -358 57 116 -511 -541 -504 -420 -453 -532 -481 -549 -470 -353 -434 -438 -470 325 161 -493 -485 -492 -433 -317 -482 -429 -524 -520 -342 -409 413 -326 -416 -349 -435 -343 -57 -433 -392 -321 -375 -453 205 -259 -559 -505 282 34 -356 -70 -475 -333 -299 -445 -475 -1 -468 -326 -334 -312 255 -226 235 -273 -630 -622 68 154 -557 -603 -636 -616 -544 -517 -44 -518 -595 5 -371 -482 -571 -615 -80 -195 -498 -421 -234 -161 -307 78 -389 146 165 -378 -410 -325 -384 -96 -250 223 -275 -265 -75 107 27 110 -355 -358 -150 45 46 -69 -279 -14 -296 44 145 85 61 -5 -331 -279 33 -283 -54 -168 -321 176 159 -291 -150 -137 223 56 -315 -120 -208 49 -61 -125 -319 -277 -215 -277 -532 -447 217 -558 -360 -167 -423 288 23 -95 -427 -325 -396 -413 -122 -250 -311 -327 -89 117 -466 -101 -26 -476 -318 -198 -376 -255 156 -325 -415 -315 -380 173 259 99 -304 -300 -295 -344 26 181 -386 -383 160 -385 151 -69 -304 -196 -322 112 242 49 -236 -378 -354 -305 56 211 -348 6 -258 -72 -244 -52 -256 -112 -197 -40 -364 -217 -294 224 101 -30 -286 10 -3 -202 -498 -419 -224 -471 54 -37 -388 234 272 -382 -407 -317 -379 -325 -74 -85 143 8 204 -306 -264 -189 -396 -69 -189 -390 -14 -378 3 -217 -51 156 193 -72 -251 -369 -361 -322 -277 -280 -236 -39 57 -152 158 -80 39 79 153 -21 -313 156 145 -204 -60 39 -315 8 -164 -464 216 305 -496 -158 -268 -472 -47 -16 -396 -277 -379 31 -306 -90 -81 -452 -469 -411 -157 123 -496 -418 -13 -163 -303 31 -385 220 113 -376 -406 -318 -379 -98 -251 25 -270 253 149 -311 -209 33 -354 22 -151 -97 45 -149 -278 -172 -46 -92 145 50 -59 -348 -330 5 -142 -318 -208 76 -356 -68 -151 -97 147 -150 -280 -172 276 112 34 -61 60 -140 -332 -280 -268 -317 -47 77 -38 -150 250 -359 121 -18 -279 -15 -46 112 -37 50 13 -352 139 222 -156 -338 -229 -48 -391 239 -183 -396 -30 -386 -318 190 -329 27 74 -6 -247 -151 -356 -313 -372 -253 -410 -399 -123 -293 -366 345 -197 -52 -102 -354 -429 -337 -203 -342 -171 118 -313 -110 -144 -290 -233 -162 -327 -68 73 -84 85 -139 -256 56 -312 -113 285 -203 97 1 -321 8 -146 94 -193 -329 -285 -443 -265 73 -337 -177 -228 -168 -320 -310 -312 -198 -113 308 -344 -389 -142 -319 -207 -138 -356 -68 75 -360 46 -347 -280 302 -296 44 34 113 13 -5 -332 6 6 273 -480 -92 -230 26 -297 77 -371 -32 33 44 -403 -310 -372 80 13 130 -270 -259 -80 123 -491 -416 -13 -162 -302 217 -383 93 -169 -51 -405 -320 -379 -96 -66 178 -270 -260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 33 E= 3.6e-165 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.939394 0.090909 0.090909 0.030303 0.000000 0.000000 0.181818 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.393939 0.090909 0.030303 0.000000 0.000000 0.575758 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.060606 0.030303 0.000000 0.000000 0.000000 0.181818 0.030303 0.030303 0.000000 0.000000 0.181818 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.606061 0.181818 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.939394 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.484848 0.000000 0.000000 0.000000 0.272727 0.121212 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.575758 0.000000 0.000000 0.000000 0.060606 0.272727 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.090909 0.000000 0.272727 0.090909 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.424242 0.000000 0.000000 0.060606 0.030303 0.060606 0.121212 0.000000 0.000000 0.000000 0.090909 0.060606 0.060606 0.000000 0.030303 0.000000 0.030303 0.151515 0.121212 0.090909 0.090909 0.000000 0.000000 0.151515 0.000000 0.030303 0.000000 0.000000 0.363636 0.060606 0.000000 0.000000 0.030303 0.151515 0.060606 0.000000 0.000000 0.000000 0.090909 0.030303 0.030303 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.242424 0.000000 0.000000 0.000000 0.000000 0.636364 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.060606 0.030303 0.000000 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.242424 0.333333 0.181818 0.000000 0.000000 0.000000 0.000000 0.060606 0.212121 0.000000 0.000000 0.060606 0.000000 0.151515 0.060606 0.000000 0.000000 0.000000 0.060606 0.303030 0.090909 0.000000 0.000000 0.000000 0.000000 0.181818 0.060606 0.000000 0.060606 0.000000 0.060606 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.333333 0.121212 0.060606 0.000000 0.030303 0.121212 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.484848 0.212121 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.030303 0.030303 0.030303 0.515152 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.090909 0.212121 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.060606 0.030303 0.060606 0.030303 0.060606 0.181818 0.090909 0.030303 0.000000 0.090909 0.151515 0.000000 0.030303 0.121212 0.000000 0.030303 0.030303 0.000000 0.242424 0.484848 0.000000 0.030303 0.000000 0.000000 0.030303 0.090909 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.060606 0.000000 0.454545 0.060606 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.090909 0.000000 0.181818 0.363636 0.000000 0.000000 0.060606 0.000000 0.121212 0.000000 0.030303 0.060606 0.030303 0.000000 0.000000 0.030303 0.000000 0.151515 0.090909 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.000000 0.090909 0.000000 0.060606 0.000000 0.030303 0.151515 0.030303 0.000000 0.000000 0.333333 0.060606 0.060606 0.030303 0.090909 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.090909 0.030303 0.030303 0.121212 0.000000 0.121212 0.090909 0.000000 0.030303 0.030303 0.060606 0.030303 0.090909 0.060606 0.000000 0.030303 0.151515 0.030303 0.000000 0.000000 0.030303 0.000000 0.515152 0.000000 0.000000 0.030303 0.000000 0.000000 0.181818 0.000000 0.030303 0.090909 0.060606 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.484848 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.303030 0.000000 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.030303 0.030303 0.090909 0.030303 0.000000 0.060606 0.000000 0.000000 0.424242 0.000000 0.121212 0.090909 0.000000 0.030303 0.030303 0.060606 0.030303 0.000000 0.000000 0.000000 0.000000 0.151515 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.030303 0.606061 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.030303 0.000000 0.060606 0.000000 0.000000 0.393939 0.000000 0.030303 0.060606 0.151515 0.060606 0.090909 0.000000 0.030303 0.121212 0.090909 0.000000 0.030303 0.000000 0.121212 0.000000 0.090909 0.000000 0.060606 0.030303 0.060606 0.000000 0.000000 0.000000 0.121212 0.060606 0.212121 0.000000 0.000000 0.060606 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.272727 0.000000 0.181818 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.030303 0.303030 0.000000 0.000000 -------------------------------------------------------------------------------- Time 36.66 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 29 sites = 33 llr = 1106 E-value = 2.3e-159 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :14::::531:1:1516:2:322:51111 pos.-specific C :::::::1::::::::1:::::::::::: probability D ::::::::1:::::1:::1:::1:::::: matrix E ::::::::::::::2::11::22:::::: F :::::::::::::1:::::2::::1::1: G ::::::a4218:9:::::1::1:8:1:11 H :::::::::::::1:::11:1:1::1::: I ::124::::::5:::2:1::1:::::1:1 K 61:::::::2:::2:::3:::21:13::: L :::51::::::3:2:2:1151:1:111:3 M :::::::::::::::1::::::1:::::: N :1::::::1:::::::::::::1::1::: P 1:::::::::::::::::::::::::::: Q 1::::::::1:::::::::::11:::::: R :1:::::::2:::2:::21::111:1::: S :::::::123::1:1:1:::111:1111: T 111::9::::1::::2::1::1:::::1: V :4425::::::1:::12:1:1:::::553 W ::::::::::::::::::::::::::::: Y :::::::::::::::1::::::::1:::: bits 6.7 6.0 5.4 4.7 Information 4.0 content 3.4 ** (48.4 bits) 2.7 *** * * 2.0 * ****** *** * * * 1.3 ****************** * * ** *** 0.7 ***************************** 0.0 ----------------------------- Multilevel KVALVTGAASGIGKATAKxLAAEGAKVVL consensus VII GG L R I F K V sequence S -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- HDE_CANTR 323 2.44e-23 SGAPTVSLKD KVVLITGAGAGLGKEYAKWFAKYGAKVVV NDFKDATKTV DHII_HUMAN 35 5.50e-23 EEFRPEMLQG KKVIVTGASKGIGREMAYHLAKMGAHVVV TARSKETLQK YINL_LISMO 6 5.38e-22 MTIKN KVIIITGASSGIGKATALLLAEKGAKLVL AARRVEKLEK HDHA_ECOLI 12 5.65e-20 FNSDNLRLDG KCAIITGAGAGIGKEIAITFATAGASVVV SDINADAANH RIDH_KLEAE 15 1.17e-19 VSSMNTSLSG KVAAITGAASGIGLECARTLLGAGAKVVL IDREGEKLNK BUDC_KLETE 3 1.17e-19 MQ KVALVTGAGQGIGKAIALRLVKDGFAVAI ADYNDATATA ENTA_ECOLI 6 4.74e-19 MDFSG KNVWVTGAGKGIGYATALAFVEAGAKVTG FDQAFTQEQY AP27_MOUSE 8 9.31e-19 MKLNFSG LRALVTGAGKGIGRDTVKALHASGAKVVA VTRTNSDLVS DHMA_FLAS1 15 2.50e-18 VSRRPGRLAG KAAIVTGAAGGIGRATVEAYLREGASVVA MDLAPRLAAT YRTP_BACSU 7 3.45e-18 MQSLQH KTALITGGGRGIGRATALALAKEGVNIGL IGRTSANVEK DHGB_BACME 8 5.86e-18 MYKDLEG KVVVITGSSTGLGKSMAIRFATEKAKVVV NYRSKEDEAN DHB3_HUMAN 49 9.86e-18 LPKSFLRSMG QWAVITGAGDGIGKAYSFELAKRGLNVVL ISRTLEKLEA PCR_PEA 87 2.47e-17 SSEGKKTLRK GNVVITGASSGLGLATAKALAESGKWHVI MACRDYLKAA BDH_HUMAN 56 3.01e-17 YASAAEPVGS KAVLVTGCDSGFGFSLAKHLHSKGFLVFA GCLMKDKGHD BA72_EUBSP 7 3.33e-17 MNLVQD KVTIITGGTRGIGFAAAKIFIDNGAKVSI FGETQEEVDT FIXR_BRAJA 37 4.06e-17 VNARVDRGEP KVMLLTGASRGIGHATAKLFSEAGWRIIS CARQPFDGER 3BHD_COMTE 7 4.06e-17 TNRLQG KVALVTGGASGVGLEVVKLLLGEGAKVAF SDINEAAGQQ 2BHD_STREX 7 8.05e-17 MNDLSG KTVIITGGARGLGAEAARQAVAAGARVVL ADVLDEEGAA HMTR_LEIMA 7 1.90e-16 MTAPTV PVALVTGAAKRLGRSIAEGLHAEGYAVCL HYHRSAAEAN FVT1_HUMAN 33 2.77e-16 ISPKPLALPG AHVVVTGGSSGIGKCIAIECYKQGAFITL VARNEDKLLQ DHB2_HUMAN 83 3.65e-16 SGQELLPVDQ KAVLVTGGDCGLGHALCKYLDELGFTVFA GVLNENGPGA LIGD_PSEPA 7 8.31e-16 MKDFQD QVAFITGGASGAGFGQAKVFGQAGAKIVV ADVRAEAVEK NODG_RHIME 7 4.05e-15 MFELTG RKALVTGASGAIGGAIARVLHAQGAIVGL HGTQIEKLET DHCA_HUMAN 5 5.24e-15 SSGI HVALVTGGNKGIGLAIVRDLCRLFSGDVV LTARDVTRGQ MAS1_AGRRA 246 3.00e-14 SHWTVEIHQS PVILVSGSNRGVGKAIAEDLIAHGYRLSL GARKVKDLEV BPHB_PSEPS 6 8.47e-14 MKLKG EAVLITGGASGLGRALVDRFVAEAKVAVL DKSAERLAEL GUTD_ECOLI 3 1.46e-13 MN QVAVVIGGGQTLGAFLCHGLAAEGYRVAV VDIQSDKAAN DHES_HUMAN 3 1.46e-13 AR TVVLITGCSSGIGLHLAVRLASDPSQSFK VYATLRDLKT RFBB_NEIGO 7 1.59e-12 MQTEGK KNILVTGGAGFIGSAVVRHIIQNTRDSVV NLDKLTYAGN ADH_DROME 7 6.97e-10 SFTLTN KNVIFVAGLGGIGLDTSKELLKRDLKNLV ILDRIENPAA FABI_ECOLI 7 3.15e-09 MGFLSG KRILVTGVASKLSIAYGIAQAMHREGAEL AFTYQNDKLK YURA_MYXXA 117 2.77e-07 RLPWERVRGI IDTNVTGAAATLSAVLPQMVERKRGHLVG VSSLAGFRGL CSGA_MYXXA 52 4.24e-07 TINALGPLRV TSAMLPGLRQGALRRVAHVTSRMGSLAAN TDGGAYAYRM -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- HDE_CANTR 2.4e-23 322_[2]_555 DHII_HUMAN 5.5e-23 34_[2]_229 YINL_LISMO 5.4e-22 5_[2]_214 HDHA_ECOLI 5.7e-20 11_[2]_215 RIDH_KLEAE 1.2e-19 14_[2]_206 BUDC_KLETE 1.2e-19 2_[2]_210 ENTA_ECOLI 4.7e-19 5_[2]_214 AP27_MOUSE 9.3e-19 7_[2]_208 DHMA_FLAS1 2.5e-18 14_[2]_227 YRTP_BACSU 3.4e-18 6_[2]_203 DHGB_BACME 5.9e-18 7_[2]_226 DHB3_HUMAN 9.9e-18 48_[2]_233 PCR_PEA 2.5e-17 86_[2]_284 BDH_HUMAN 3e-17 55_[2]_259 BA72_EUBSP 3.3e-17 6_[2]_214 FIXR_BRAJA 4.1e-17 36_[2]_213 3BHD_COMTE 4.1e-17 6_[2]_218 2BHD_STREX 8e-17 6_[2]_220 HMTR_LEIMA 1.9e-16 6_[2]_252 FVT1_HUMAN 2.8e-16 32_[2]_271 DHB2_HUMAN 3.7e-16 82_[2]_276 LIGD_PSEPA 8.3e-16 6_[2]_270 NODG_RHIME 4.1e-15 6_[2]_210 DHCA_HUMAN 5.2e-15 4_[2]_243 MAS1_AGRRA 3e-14 245_[2]_202 BPHB_PSEPS 8.5e-14 5_[2]_241 GUTD_ECOLI 1.5e-13 2_[2]_228 DHES_HUMAN 1.5e-13 2_[2]_296 RFBB_NEIGO 1.6e-12 6_[2]_311 ADH_DROME 7e-10 6_[2]_220 FABI_ECOLI 3.1e-09 6_[2]_227 YURA_MYXXA 2.8e-07 116_[2]_113 CSGA_MYXXA 4.2e-07 51_[2]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=29 seqs=33 HDE_CANTR ( 323) KVVLITGAGAGLGKEYAKWFAKYGAKVVV 1 DHII_HUMAN ( 35) KKVIVTGASKGIGREMAYHLAKMGAHVVV 1 YINL_LISMO ( 6) KVIIITGASSGIGKATALLLAEKGAKLVL 1 HDHA_ECOLI ( 12) KCAIITGAGAGIGKEIAITFATAGASVVV 1 RIDH_KLEAE ( 15) KVAAITGAASGIGLECARTLLGAGAKVVL 1 BUDC_KLETE ( 3) KVALVTGAGQGIGKAIALRLVKDGFAVAI 1 ENTA_ECOLI ( 6) KNVWVTGAGKGIGYATALAFVEAGAKVTG 1 AP27_MOUSE ( 8) LRALVTGAGKGIGRDTVKALHASGAKVVA 1 DHMA_FLAS1 ( 15) KAAIVTGAAGGIGRATVEAYLREGASVVA 1 YRTP_BACSU ( 7) KTALITGGGRGIGRATALALAKEGVNIGL 1 DHGB_BACME ( 8) KVVVITGSSTGLGKSMAIRFATEKAKVVV 1 DHB3_HUMAN ( 49) QWAVITGAGDGIGKAYSFELAKRGLNVVL 1 PCR_PEA ( 87) GNVVITGASSGLGLATAKALAESGKWHVI 1 BDH_HUMAN ( 56) KAVLVTGCDSGFGFSLAKHLHSKGFLVFA 1 BA72_EUBSP ( 7) KVTIITGGTRGIGFAAAKIFIDNGAKVSI 1 FIXR_BRAJA ( 37) KVMLLTGASRGIGHATAKLFSEAGWRIIS 1 3BHD_COMTE ( 7) KVALVTGGASGVGLEVVKLLLGEGAKVAF 1 2BHD_STREX ( 7) KTVIITGGARGLGAEAARQAVAAGARVVL 1 HMTR_LEIMA ( 7) PVALVTGAAKRLGRSIAEGLHAEGYAVCL 1 FVT1_HUMAN ( 33) AHVVVTGGSSGIGKCIAIECYKQGAFITL 1 DHB2_HUMAN ( 83) KAVLVTGGDCGLGHALCKYLDELGFTVFA 1 LIGD_PSEPA ( 7) QVAFITGGASGAGFGQAKVFGQAGAKIVV 1 NODG_RHIME ( 7) RKALVTGASGAIGGAIARVLHAQGAIVGL 1 DHCA_HUMAN ( 5) HVALVTGGNKGIGLAIVRDLCRLFSGDVV 1 MAS1_AGRRA ( 246) PVILVSGSNRGVGKAIAEDLIAHGYRLSL 1 BPHB_PSEPS ( 6) EAVLITGGASGLGRALVDRFVAEAKVAVL 1 GUTD_ECOLI ( 3) QVAVVIGGGQTLGAFLCHGLAAEGYRVAV 1 DHES_HUMAN ( 3) TVVLITGCSSGIGLHLAVRLASDPSQSFK 1 RFBB_NEIGO ( 7) KNILVTGGAGFIGSAVVRHIIQNTRDSVV 1 ADH_DROME ( 7) KNVIFVAGLGGIGLDTSKELLKRDLKNLV 1 FABI_ECOLI ( 7) KRILVTGVASKLSIAYGIAQAMHREGAEL 1 YURA_MYXXA ( 117) IDTNVTGAAATLSAVLPQMVERKRGHLVG 1 CSGA_MYXXA ( 52) TSAMLPGLRQGALRRVAHVTSRMGSLAAN 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.09755 E= 2.3e-159 -143 -322 -212 -29 -360 -150 75 -97 323 -150 -283 -174 41 159 -35 -190 13 -356 -334 -283 0 103 -55 -150 -343 -365 68 -277 37 -328 -270 137 -300 -104 27 -68 8 216 134 -284 184 -328 -685 -628 -415 -668 -559 121 -607 -334 17 -587 -610 -559 -621 -535 7 212 -519 -487 -171 -214 -506 -425 -20 -485 -317 170 -395 240 30 -63 -412 -320 -383 -339 -272 73 137 -278 -548 -378 -767 -727 -25 -789 -710 277 -719 -45 -344 -695 -699 -669 -749 -678 -480 260 -602 -574 -390 -251 -433 -462 -434 -534 -365 -109 -376 -462 -320 -258 -80 -318 -390 -26 386 -153 -406 -454 -198 -345 -337 -398 -504 336 -361 -523 -381 -566 -470 -293 -442 -394 -385 -308 -423 -506 -397 -449 205 225 -616 -594 -556 193 -536 -552 -603 -163 -504 -510 -489 -501 -571 4 -361 -139 -540 -583 131 -370 35 -219 -442 128 -213 -456 -212 -158 -382 70 -370 -181 -55 181 -71 -445 -421 -359 -30 108 -48 -141 -360 23 -153 -364 148 -351 -284 -173 -299 159 146 204 -60 -357 -335 -283 -204 -337 -316 -378 -112 323 -341 -505 -141 -549 -452 -272 -427 -375 -136 -296 -74 -492 -378 -430 -95 -361 -677 -632 -23 -695 -554 323 -604 166 -255 -593 -615 -536 -614 -563 -440 -15 -461 -462 -326 -337 -324 -385 -492 331 -348 -511 -368 -235 -458 -280 -431 -381 -372 -66 -413 -495 -385 -437 -30 -269 -258 -187 114 -153 158 -74 206 82 -239 -214 -326 -135 191 -71 -224 -281 -312 9 237 89 -43 92 -86 -158 5 -315 -262 -325 -263 -289 -394 -232 -114 27 -229 -127 -314 -338 -79 126 -496 -418 -229 -460 -302 183 -384 95 114 -373 -406 -2 -380 -314 194 28 -269 160 260 176 -422 -376 -354 -156 -358 -340 -378 -355 -293 -375 -107 -342 -381 -6 -258 55 -342 -392 -270 -314 -48 76 -39 -361 159 86 236 21 -276 -175 -299 43 146 -189 -211 -138 -330 6 56 -301 25 75 -338 -68 212 -90 -130 -15 8 -180 -302 41 116 -193 13 -2 141 7 -177 105 -501 -421 238 -487 -316 -44 -391 257 -134 -393 -406 -19 -377 -340 -87 -96 -279 -4 151 122 -87 -90 -241 -159 248 70 -331 38 -181 -340 -395 -280 -347 -10 -242 54 -276 11 75 -319 -47 137 -356 -68 -150 -361 189 -347 5 -170 -296 112 117 5 13 -353 -332 -279 55 -318 27 179 -355 -357 159 -360 88 -69 94 59 -295 112 34 6 -209 -352 -331 6 -204 -337 -127 -377 -112 318 -341 -505 -141 -549 -452 -272 -122 -374 -52 -296 -161 -492 -378 -430 225 -109 -325 -105 68 -158 -257 -288 -22 -98 -250 -283 -385 -221 -102 31 -229 -121 98 106 -75 -318 -47 -137 -40 -68 159 -97 236 -69 -279 59 -295 44 117 6 -59 -140 140 -279 -91 -125 -192 -330 -284 -443 -59 58 -338 -101 -228 -167 -320 -310 -312 -132 -175 304 -343 -387 -59 39 -374 -175 10 -177 -269 -2 -342 -164 -220 -355 -327 -311 -318 -112 -56 295 -333 -366 6 -192 -493 -415 -11 -69 -301 78 -81 174 -170 -49 -406 -318 -378 -94 -246 162 -269 -259 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 33 E= 2.3e-159 0.030303 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.030303 0.575758 0.030303 0.000000 0.000000 0.060606 0.090909 0.030303 0.000000 0.060606 0.000000 0.000000 0.000000 0.121212 0.030303 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.121212 0.000000 0.000000 0.060606 0.030303 0.060606 0.424242 0.030303 0.000000 0.424242 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.121212 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.363636 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.212121 0.000000 0.484848 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.151515 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.393939 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.515152 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.030303 0.878788 0.030303 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.969697 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.454545 0.060606 0.000000 0.000000 0.000000 0.363636 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.030303 0.000000 0.000000 0.303030 0.000000 0.060606 0.000000 0.000000 0.242424 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.030303 0.242424 0.030303 0.000000 0.000000 0.000000 0.090909 0.030303 0.030303 0.000000 0.000000 0.121212 0.000000 0.000000 0.151515 0.000000 0.000000 0.000000 0.000000 0.090909 0.151515 0.303030 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.818182 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.545455 0.000000 0.303030 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.090909 0.030303 0.060606 0.030303 0.242424 0.181818 0.000000 0.000000 0.000000 0.000000 0.212121 0.030303 0.000000 0.000000 0.000000 0.030303 0.484848 0.030303 0.060606 0.181818 0.030303 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.090909 0.000000 0.030303 0.000000 0.000000 0.060606 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.212121 0.000000 0.181818 0.060606 0.000000 0.000000 0.030303 0.000000 0.000000 0.242424 0.090909 0.000000 0.090909 0.636364 0.060606 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.060606 0.000000 0.181818 0.000000 0.000000 0.000000 0.000000 0.030303 0.090909 0.030303 0.000000 0.060606 0.121212 0.303030 0.121212 0.000000 0.000000 0.000000 0.030303 0.151515 0.000000 0.000000 0.030303 0.000000 0.030303 0.181818 0.000000 0.060606 0.090909 0.000000 0.060606 0.090909 0.030303 0.000000 0.090909 0.030303 0.000000 0.000000 0.030303 0.121212 0.000000 0.060606 0.090909 0.030303 0.030303 0.030303 0.030303 0.000000 0.000000 0.242424 0.000000 0.000000 0.030303 0.000000 0.545455 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.030303 0.333333 0.030303 0.030303 0.030303 0.000000 0.030303 0.121212 0.090909 0.000000 0.121212 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.121212 0.000000 0.030303 0.212121 0.000000 0.030303 0.151515 0.000000 0.060606 0.000000 0.000000 0.212121 0.000000 0.030303 0.000000 0.000000 0.060606 0.121212 0.060606 0.060606 0.000000 0.000000 0.000000 0.181818 0.000000 0.060606 0.212121 0.000000 0.000000 0.060606 0.000000 0.090909 0.060606 0.060606 0.060606 0.000000 0.060606 0.060606 0.060606 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.030303 0.000000 0.030303 0.757576 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.030303 0.000000 0.000000 0.000000 0.454545 0.000000 0.000000 0.030303 0.090909 0.030303 0.000000 0.000000 0.060606 0.060606 0.000000 0.000000 0.000000 0.000000 0.030303 0.090909 0.000000 0.030303 0.030303 0.090909 0.060606 0.000000 0.030303 0.000000 0.030303 0.060606 0.060606 0.030303 0.303030 0.060606 0.000000 0.060606 0.000000 0.030303 0.121212 0.060606 0.030303 0.030303 0.030303 0.000000 0.090909 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.121212 0.000000 0.090909 0.000000 0.030303 0.000000 0.000000 0.000000 0.060606 0.000000 0.545455 0.000000 0.000000 0.121212 0.030303 0.000000 0.030303 0.090909 0.060606 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.060606 0.484848 0.000000 0.000000 0.121212 0.000000 0.000000 0.000000 0.030303 0.060606 0.000000 0.090909 0.030303 0.333333 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.272727 0.000000 0.000000 -------------------------------------------------------------------------------- Time 67.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2BHD_STREX 3.15e-28 6_[2(8.05e-17)]_116_[1(1.11e-18)]_75 3BHD_COMTE 9.69e-25 6_[2(4.06e-17)]_115_[1(7.81e-15)]_74 ADH_DROME 6.95e-15 6_[2(6.97e-10)]_116_[1(5.20e-12)]_75 AP27_MOUSE 2.21e-33 7_[2(9.31e-19)]_112_[1(6.32e-22)]_67 BA72_EUBSP 2.62e-26 6_[2(3.33e-17)]_121_[1(2.52e-16)]_64 BDH_HUMAN 1.58e-26 55_[2(3.01e-17)]_123_[1(8.20e-17)]_107 BPHB_PSEPS 4.38e-19 5_[2(8.47e-14)]_118_[1(1.80e-12)]_94 BUDC_KLETE 1.73e-33 2_[2(1.17e-19)]_120_[1(4.04e-21)]_61 DHES_HUMAN 9.98e-23 2_[2(1.46e-13)]_123_[1(1.37e-16)]_144 DHGB_BACME 1.78e-30 7_[2(5.86e-18)]_123_[1(7.52e-20)]_74 DHII_HUMAN 4.64e-31 34_[2(5.50e-23)]_119_[1(1.61e-15)]_81 DHMA_FLAS1 5.69e-29 14_[2(2.50e-18)]_121_[1(5.53e-18)]_77 ENTA_ECOLI 2.69e-27 5_[2(4.74e-19)]_109_[1(1.77e-15)]_76 FIXR_BRAJA 1.15e-30 36_[2(4.06e-17)]_123_[1(6.12e-21)]_61 GUTD_ECOLI 2.33e-25 2_[2(1.46e-13)]_122_[1(4.82e-19)]_77 HDE_CANTR 1.43e-32 8_[2(3.45e-18)]_125_[1(4.01e-13)]_131_[2(2.44e-23)]_115_[1(9.65e-18)]_411 HDHA_ECOLI 2.75e-31 11_[2(5.65e-20)]_74_[1(4.42e-05)]_15_[1(1.25e-18)]_68 LIGD_PSEPA 4.54e-24 6_[2(8.31e-16)]_121_[1(1.21e-15)]_120 NODG_RHIME 1.55e-29 6_[2(4.05e-15)]_116_[1(1.13e-21)]_65 RIDH_KLEAE 3.67e-29 14_[2(1.17e-19)]_116_[1(9.09e-17)]_61 YINL_LISMO 5.92e-29 5_[2(5.38e-22)]_119_[1(3.24e-14)]_66 YRTP_BACSU 2.01e-33 6_[2(3.45e-18)]_119_[1(1.64e-22)]_55 CSGA_MYXXA 5.53e-13 51_[2(4.24e-07)]_7_[1(2.10e-12)]_50 DHB2_HUMAN 6.87e-27 82_[2(3.65e-16)]_120_[1(2.23e-18)]_127 DHB3_HUMAN 4.11e-25 48_[2(9.86e-18)]_120_[1(8.55e-15)]_84 DHCA_HUMAN 6.86e-18 4_[2(5.24e-15)]_159_[1(4.80e-10)]_55 FABI_ECOLI 2.57e-14 6_[2(3.15e-09)]_123_[1(4.15e-12)]_75 FVT1_HUMAN 4.64e-26 32_[2(2.77e-16)]_124_[1(2.86e-17)]_118 HMTR_LEIMA 2.93e-28 6_[2(1.90e-16)]_157_[1(3.35e-19)]_66 MAS1_AGRRA 1.26e-14 245_[2(3.00e-14)]_74_[1(5.72e-08)]_99 PCR_PEA 4.22e-18 25_[1(2.77e-08)]_32_[2(2.47e-17)]_284 RFBB_NEIGO 1.14e-19 6_[2(1.59e-12)]_129_[1(1.47e-14)]_153 YURA_MYXXA 3.34e-19 116_[2(2.77e-07)]_14_[1(4.82e-19)]_70 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 2 reached. ******************************************************************************** CPU: pmgm2 ********************************************************************************