#!/usr/bin/env python # Copyright 2001 by Brad Chapman. All rights reserved. # This code is part of the Biopython distribution and governed by its # license. Please see the LICENSE file that should have been included # as part of this package. """Test for graphics things that don't really deserve there own test module. XXX Right now this test occasionally fails with a trace like: File "/usr/local/lib/python2.1/site-packages/reportlab/graphics/ charts/lineplots.py", line 182, in calcPositions datum = self.data[rowNo][colNo] # x,y value IndexError: list index out of range This appears to be a problem with reportlab, so I'm not worrying about it right now, unless it starts to happen with real data! If anyone can figure out the data that causes it so I can avoid it, that'd be much appreciated. """ # standard library import os import random import unittest from Bio import MissingExternalDependencyError try: # Skip the test if reportlab is not installed import reportlab as r del r except: raise MissingExternalDependencyError(\ "Install reportlab if you want to use Bio.Graphics.") # the stuff we're testing from Bio.Graphics.Comparative import ComparativeScatterPlot class ComparativeTest(unittest.TestCase): """Do tests for modules involved with comparing data. """ def setUp(self): self.min_two_d_lists = 1 self.max_two_d_lists = 7 self.min_num_points = 1 self.max_num_points = 500 self.min_point_num = 0 self.max_point_num = 200 def _make_random_points(self): """Make a bunch of random points for testing plots. """ plot_info = [] num_two_d_lists = random.randrange(self.min_two_d_lists, self.max_two_d_lists) for two_d_list in range(num_two_d_lists): cur_list = [] num_points = random.randrange(self.min_num_points, self.max_num_points) for point in range(num_points): x_point = random.randrange(self.min_point_num, self.max_point_num) y_point = random.randrange(self.min_point_num, self.max_point_num) cur_list.append((x_point, y_point)) plot_info.append(cur_list) return plot_info def test_simple_scatter_plot(self): """Test creation of a simple ScatterPlot. """ compare_plot = ComparativeScatterPlot() compare_plot.display_info = self._make_random_points() output_file = os.path.join(os.getcwd(), "Graphics", "scatter_test.pdf") try: compare_plot.draw_to_file(output_file, "Testing Scatter Plots") # there is a bug in reportlab which occasionally generates an # error here. except IndexError: pass if __name__ == "__main__": runner = unittest.TextTestRunner(verbosity = 2) unittest.main(testRunner=runner)