# This code is part of the Biopython distribution and governed by its # license. Please see the LICENSE file that should have been included # as part of this package. from Bio import UniGene import unittest class TestUniGene(unittest.TestCase): def test_parse(self): #Start of the UniGene file for Equus caballus downloaded from: #ftp://ftp.ncbi.nih.gov/repository/UniGene/Equus_caballus handle = open("UniGene/Eca.1.2425.data") records = UniGene.parse(handle) # First record record = records.next() self.assertEqual(record.ID, "Eca.1") self.assertEqual(record.title, "Ribosomal protein L3") self.assertEqual(record.symbol, "RPL3") self.assertEqual(record.gene_id, "100070291") self.assertEqual(record.locuslink, "100070291") self.assertEqual(record.homol, True) self.assertEqual(record.express, ["blood", "cartilage", "trophoblast", "adult"]) self.assertEqual(record.restr_expr, ["blood", "adult"]) self.assertEqual(len(record.protsim), 40) self.assertEqual(record.protsim[0].org, "10090") self.assertEqual(record.protsim[0].protgi, "149270989") self.assertEqual(record.protsim[0].protid, "XP_001477314.1") self.assertEqual(record.protsim[0].pct, "99.26") self.assertEqual(record.protsim[0].aln, "401") self.assertEqual(record.protsim[1].org, "5207") self.assertEqual(record.protsim[1].protgi, "134117057") self.assertEqual(record.protsim[1].protid, "XP_772755.1") self.assertEqual(record.protsim[1].pct, "70.91") self.assertEqual(record.protsim[1].aln, "384") self.assertEqual(record.protsim[2].org, "44689") self.assertEqual(record.protsim[2].protgi, "66802278") self.assertEqual(record.protsim[2].protid, "XP_629921.1") self.assertEqual(record.protsim[2].pct, "67.76") self.assertEqual(record.protsim[2].aln, "396") self.assertEqual(record.protsim[3].org, "9606") self.assertEqual(record.protsim[3].protgi, "4506649") self.assertEqual(record.protsim[3].protid, "NP_000958.1") self.assertEqual(record.protsim[3].pct, "99.50") self.assertEqual(record.protsim[3].aln, "401") self.assertEqual(record.protsim[4].org, "7719") self.assertEqual(record.protsim[4].protgi, "198435984") self.assertEqual(record.protsim[4].protid, "XP_002132034.1") self.assertEqual(record.protsim[4].pct, "80.15") self.assertEqual(record.protsim[4].aln, "402") self.assertEqual(record.protsim[5].org, "13616") self.assertEqual(record.protsim[5].protgi, "126339540") self.assertEqual(record.protsim[5].protid, "XP_001366844.1") self.assertEqual(record.protsim[5].pct, "97.05") self.assertEqual(record.protsim[5].aln, "405") self.assertEqual(record.protsim[6].org, "9615") self.assertEqual(record.protsim[6].protgi, "73969069") self.assertEqual(record.protsim[6].protid, "XP_531732.2") self.assertEqual(record.protsim[6].pct, "99.50") self.assertEqual(record.protsim[6].aln, "401") self.assertEqual(record.protsim[7].org, "3218") self.assertEqual(record.protsim[7].protgi, "168040500") self.assertEqual(record.protsim[7].protid, "XP_001772732.1") self.assertEqual(record.protsim[7].pct, "73.01") self.assertEqual(record.protsim[7].aln, "388") self.assertEqual(record.protsim[8].org, "9913") self.assertEqual(record.protsim[8].protgi, "27807287") self.assertEqual(record.protsim[8].protid, "NP_777140.1") self.assertEqual(record.protsim[8].pct, "99.26") self.assertEqual(record.protsim[8].aln, "401") self.assertEqual(record.protsim[9].org, "8355") self.assertEqual(record.protsim[9].protgi, "148228673") self.assertEqual(record.protsim[9].protid, "NP_001080341.1") self.assertEqual(record.protsim[9].pct, "94.04") self.assertEqual(record.protsim[9].aln, "401") self.assertEqual(record.protsim[10].org, "9258") self.assertEqual(record.protsim[10].protgi, "149585070") self.assertEqual(record.protsim[10].protid, "XP_001514408.1") self.assertEqual(record.protsim[10].pct, "97.29") self.assertEqual(record.protsim[10].aln, "367") self.assertEqual(record.protsim[11].org, "7955") self.assertEqual(record.protsim[11].protgi, "48597014") self.assertEqual(record.protsim[11].protid, "NP_001001590.1") self.assertEqual(record.protsim[11].pct, "92.31") self.assertEqual(record.protsim[11].aln, "401") self.assertEqual(record.protsim[12].org, "7227") self.assertEqual(record.protsim[12].protgi, "17737907") self.assertEqual(record.protsim[12].protid, "NP_524316.1") self.assertEqual(record.protsim[12].pct, "78.91") self.assertEqual(record.protsim[12].aln, "402") self.assertEqual(record.protsim[13].org, "28985") self.assertEqual(record.protsim[13].protgi, "50311593") self.assertEqual(record.protsim[13].protid, "XP_455822.1") self.assertEqual(record.protsim[13].pct, "72.28") self.assertEqual(record.protsim[13].aln, "385") self.assertEqual(record.protsim[14].org, "9796") self.assertEqual(record.protsim[14].protgi, "149743311") self.assertEqual(record.protsim[14].protid, "XP_001501957.1") self.assertEqual(record.protsim[14].pct, "100.00") self.assertEqual(record.protsim[14].aln, "401") self.assertEqual(record.protsim[15].org, "4896") self.assertEqual(record.protsim[15].protgi, "19115692") self.assertEqual(record.protsim[15].protid, "NP_594780.1") self.assertEqual(record.protsim[15].pct, "74.61") self.assertEqual(record.protsim[15].aln, "385") self.assertEqual(record.protsim[16].org, "4932") self.assertEqual(record.protsim[16].protgi, "6324637") self.assertEqual(record.protsim[16].protid, "NP_014706.1") self.assertEqual(record.protsim[16].pct, "72.02") self.assertEqual(record.protsim[16].aln, "385") self.assertEqual(record.protsim[17].org, "8364") self.assertEqual(record.protsim[17].protgi, "187607061") self.assertEqual(record.protsim[17].protid, "NP_001120075.1") self.assertEqual(record.protsim[17].pct, "94.54") self.assertEqual(record.protsim[17].aln, "401") self.assertEqual(record.protsim[18].org, "5911") self.assertEqual(record.protsim[18].protgi, "118389862") self.assertEqual(record.protsim[18].protid, "XP_001027976.1") self.assertEqual(record.protsim[18].pct, "64.60") self.assertEqual(record.protsim[18].aln, "386") self.assertEqual(record.protsim[19].org, "4530") self.assertEqual(record.protsim[19].protgi, "115487526") self.assertEqual(record.protsim[19].protid, "NP_001066250.1") self.assertEqual(record.protsim[19].pct, "73.20") self.assertEqual(record.protsim[19].aln, "387") self.assertEqual(record.protsim[20].org, "10116") self.assertEqual(record.protsim[20].protgi, "38454246") self.assertEqual(record.protsim[20].protid, "NP_942048.1") self.assertEqual(record.protsim[20].pct, "99.01") self.assertEqual(record.protsim[20].aln, "401") self.assertEqual(record.protsim[21].org, "5833") self.assertEqual(record.protsim[21].protgi, "124802670") self.assertEqual(record.protsim[21].protid, "XP_001347556.1") self.assertEqual(record.protsim[21].pct, "69.45") self.assertEqual(record.protsim[21].aln, "382") self.assertEqual(record.protsim[22].org, "148305") self.assertEqual(record.protsim[22].protgi, "145608344") self.assertEqual(record.protsim[22].protid, "XP_360650.2") self.assertEqual(record.protsim[22].pct, "71.28") self.assertEqual(record.protsim[22].aln, "389") self.assertEqual(record.protsim[23].org, "7668") self.assertEqual(record.protsim[23].protgi, "115725235") self.assertEqual(record.protsim[23].protid, "XP_791350.2") self.assertEqual(record.protsim[23].pct, "81.50") self.assertEqual(record.protsim[23].aln, "399") self.assertEqual(record.protsim[24].org, "3702") self.assertEqual(record.protsim[24].protgi, "15218306") self.assertEqual(record.protsim[24].protid, "NP_175009.1") self.assertEqual(record.protsim[24].pct, "71.47") self.assertEqual(record.protsim[24].aln, "387") self.assertEqual(record.protsim[25].org, "45351") self.assertEqual(record.protsim[25].protgi, "156359547") self.assertEqual(record.protsim[25].protid, "XP_001624829.1") self.assertEqual(record.protsim[25].pct, "80.10") self.assertEqual(record.protsim[25].aln, "396") self.assertEqual(record.protsim[26].org, "7091") self.assertEqual(record.protsim[26].protgi, "112982798") self.assertEqual(record.protsim[26].protid, "NP_001037126.1") self.assertEqual(record.protsim[26].pct, "80.65") self.assertEqual(record.protsim[26].aln, "402") self.assertEqual(record.protsim[27].org, "33169") self.assertEqual(record.protsim[27].protgi, "45188079") self.assertEqual(record.protsim[27].protid, "NP_984302.1") self.assertEqual(record.protsim[27].pct, "72.35") self.assertEqual(record.protsim[27].aln, "386") self.assertEqual(record.protsim[28].org, "7460") self.assertEqual(record.protsim[28].protgi, "66566113") self.assertEqual(record.protsim[28].protid, "XP_624821.1") self.assertEqual(record.protsim[28].pct, "80.89") self.assertEqual(record.protsim[28].aln, "402") self.assertEqual(record.protsim[29].org, "5141") self.assertEqual(record.protsim[29].protgi, "164424622") self.assertEqual(record.protsim[29].protid, "XP_963317.2") self.assertEqual(record.protsim[29].pct, "71.54") self.assertEqual(record.protsim[29].aln, "389") self.assertEqual(record.protsim[30].org, "6239") self.assertEqual(record.protsim[30].protgi, "71984538") self.assertEqual(record.protsim[30].protid, "NP_001021254.1") self.assertEqual(record.protsim[30].pct, "75.63") self.assertEqual(record.protsim[30].aln, "397") self.assertEqual(record.protsim[31].org, "3055") self.assertEqual(record.protsim[31].protgi, "159489312") self.assertEqual(record.protsim[31].protid, "XP_001702641.1") self.assertEqual(record.protsim[31].pct, "72.99") self.assertEqual(record.protsim[31].aln, "384") self.assertEqual(record.protsim[32].org, "7070") self.assertEqual(record.protsim[32].protgi, "189240524") self.assertEqual(record.protsim[32].protid, "XP_971875.2") self.assertEqual(record.protsim[32].pct, "76.67") self.assertEqual(record.protsim[32].aln, "402") self.assertEqual(record.protsim[33].org, "7165") self.assertEqual(record.protsim[33].protgi, "158291770") self.assertEqual(record.protsim[33].protid, "XP_313303.4") self.assertEqual(record.protsim[33].pct, "76.56") self.assertEqual(record.protsim[33].aln, "400") self.assertEqual(record.protsim[34].org, "9544") self.assertEqual(record.protsim[34].protgi, "109094341") self.assertEqual(record.protsim[34].protid, "XP_001095608.1") self.assertEqual(record.protsim[34].pct, "99.50") self.assertEqual(record.protsim[34].aln, "401") self.assertEqual(record.protsim[35].org, "7176") self.assertEqual(record.protsim[35].protgi, "170041842") self.assertEqual(record.protsim[35].protid, "XP_001848658.1") self.assertEqual(record.protsim[35].pct, "74.75") self.assertEqual(record.protsim[35].aln, "403") self.assertEqual(record.protsim[36].org, "5888") self.assertEqual(record.protsim[36].protgi, "145475213") self.assertEqual(record.protsim[36].protid, "XP_001423629.1") self.assertEqual(record.protsim[36].pct, "66.67") self.assertEqual(record.protsim[36].aln, "377") self.assertEqual(record.protsim[37].org, "9031") self.assertEqual(record.protsim[37].protgi, "57525400") self.assertEqual(record.protsim[37].protid, "NP_001006241.1") self.assertEqual(record.protsim[37].pct, "97.27") self.assertEqual(record.protsim[37].aln, "401") self.assertEqual(record.protsim[38].org, "7029") self.assertEqual(record.protsim[38].protgi, "193580256") self.assertEqual(record.protsim[38].protid, "XP_001951042.1") self.assertEqual(record.protsim[38].pct, "79.40") self.assertEqual(record.protsim[38].aln, "402") self.assertEqual(record.protsim[39].org, "9598") self.assertEqual(record.protsim[39].protgi, "114608746") self.assertEqual(record.protsim[39].protid, "XP_518669.2") self.assertEqual(record.protsim[39].pct, "93.73") self.assertEqual(record.protsim[39].aln, "381") self.assertEqual(len(record.sequence), 69) self.assertEqual(record.sequence[0].acc, "XM_001501907.1") self.assertEqual(record.sequence[0].nid, "g149743310") self.assertEqual(record.sequence[0].pid, "g149743311") self.assertEqual(record.sequence[0].seqtype, "Model") self.assertEqual(record.sequence[1].acc, "CD469355.1") self.assertEqual(record.sequence[1].nid, "g31390623") self.assertEqual(record.sequence[1].clone, "LeukoS2_3_H08_A024") self.assertEqual(record.sequence[1].end, "5'") self.assertEqual(record.sequence[1].lid, "13776") self.assertEqual(record.sequence[1].seqtype, "EST") self.assertEqual(record.sequence[1].trace, "891191391") self.assertEqual(record.sequence[2].acc, "CD535273.1") self.assertEqual(record.sequence[2].nid, "g31577688") self.assertEqual(record.sequence[2].clone, "LeukoN5_1_E01_A027") self.assertEqual(record.sequence[2].end, "5'") self.assertEqual(record.sequence[2].lid, "13843") self.assertEqual(record.sequence[2].seqtype, "EST") self.assertEqual(record.sequence[2].trace, "891188893") self.assertEqual(record.sequence[3].acc, "CD466249.1") self.assertEqual(record.sequence[3].nid, "g31387517") self.assertEqual(record.sequence[3].clone, "LeukoN2_3_E11_A024") self.assertEqual(record.sequence[3].end, "3'") self.assertEqual(record.sequence[3].lid, "13773") self.assertEqual(record.sequence[3].seqtype, "EST") self.assertEqual(record.sequence[3].trace, "891186094") self.assertEqual(record.sequence[4].acc, "CD465822.1") self.assertEqual(record.sequence[4].nid, "g31387090") self.assertEqual(record.sequence[4].clone, "LeukoN1_8_C11_A023") self.assertEqual(record.sequence[4].end, "3'") self.assertEqual(record.sequence[4].lid, "13772") self.assertEqual(record.sequence[4].seqtype, "EST") self.assertEqual(record.sequence[4].trace, "891184882") self.assertEqual(record.sequence[5].acc, "CD466309.1") self.assertEqual(record.sequence[5].nid, "g31387577") self.assertEqual(record.sequence[5].clone, "LeukoN2_3_E11_A024") self.assertEqual(record.sequence[5].end, "5'") self.assertEqual(record.sequence[5].lid, "13773") self.assertEqual(record.sequence[5].seqtype, "EST") self.assertEqual(record.sequence[5].trace, "891185997") self.assertEqual(record.sequence[6].acc, "CD465893.1") self.assertEqual(record.sequence[6].nid, "g31387161") self.assertEqual(record.sequence[6].clone, "LeukoN1_8_C11_A023") self.assertEqual(record.sequence[6].end, "5'") self.assertEqual(record.sequence[6].lid, "13772") self.assertEqual(record.sequence[6].seqtype, "EST") self.assertEqual(record.sequence[6].trace, "891185010") self.assertEqual(record.sequence[7].acc, "CD471087.1") self.assertEqual(record.sequence[7].nid, "g31392355") self.assertEqual(record.sequence[7].clone, "LeukoS5_4_H03_A027") self.assertEqual(record.sequence[7].end, "5'") self.assertEqual(record.sequence[7].lid, "13778") self.assertEqual(record.sequence[7].seqtype, "EST") self.assertEqual(record.sequence[7].trace, "891193766") self.assertEqual(record.sequence[8].acc, "CD472103.1") self.assertEqual(record.sequence[8].nid, "g31393371") self.assertEqual(record.sequence[8].clone, "LeukoS6_1_C10_A028") self.assertEqual(record.sequence[8].end, "3'") self.assertEqual(record.sequence[8].lid, "13779") self.assertEqual(record.sequence[8].seqtype, "EST") self.assertEqual(record.sequence[8].trace, "891194618") self.assertEqual(record.sequence[9].acc, "CD471067.1") self.assertEqual(record.sequence[9].nid, "g31392335") self.assertEqual(record.sequence[9].clone, "LeukoS5_4_H03_A027") self.assertEqual(record.sequence[9].end, "3'") self.assertEqual(record.sequence[9].lid, "13778") self.assertEqual(record.sequence[9].seqtype, "EST") self.assertEqual(record.sequence[9].trace, "891194175") self.assertEqual(record.sequence[10].acc, "CD470984.1") self.assertEqual(record.sequence[10].nid, "g31392252") self.assertEqual(record.sequence[10].clone, "LeukoS5_3_A04_A027") self.assertEqual(record.sequence[10].end, "5'") self.assertEqual(record.sequence[10].lid, "13778") self.assertEqual(record.sequence[10].seqtype, "EST") self.assertEqual(record.sequence[10].trace, "891194114") self.assertEqual(record.sequence[11].acc, "CD472154.1") self.assertEqual(record.sequence[11].nid, "g31393422") self.assertEqual(record.sequence[11].clone, "LeukoS6_1_H10_A028") self.assertEqual(record.sequence[11].end, "3'") self.assertEqual(record.sequence[11].lid, "13779") self.assertEqual(record.sequence[11].seqtype, "EST") self.assertEqual(record.sequence[11].trace, "891195062") self.assertEqual(record.sequence[12].acc, "CD467586.1") self.assertEqual(record.sequence[12].nid, "g31388854") self.assertEqual(record.sequence[12].clone, "LeukoS1_5_G11_A023") self.assertEqual(record.sequence[12].end, "5'") self.assertEqual(record.sequence[12].lid, "13774") self.assertEqual(record.sequence[12].seqtype, "EST") self.assertEqual(record.sequence[12].trace, "891190912") self.assertEqual(record.sequence[13].acc, "CD465578.1") self.assertEqual(record.sequence[13].nid, "g31386846") self.assertEqual(record.sequence[13].clone, "LeukoN1_5_F07_A023") self.assertEqual(record.sequence[13].end, "5'") self.assertEqual(record.sequence[13].lid, "13772") self.assertEqual(record.sequence[13].seqtype, "EST") self.assertEqual(record.sequence[13].trace, "891185096") self.assertEqual(record.sequence[14].acc, "CD465858.1") self.assertEqual(record.sequence[14].nid, "g31387126") self.assertEqual(record.sequence[14].clone, "LeukoN1_8_H04_A023") self.assertEqual(record.sequence[14].end, "3'") self.assertEqual(record.sequence[14].lid, "13772") self.assertEqual(record.sequence[14].seqtype, "EST") self.assertEqual(record.sequence[14].trace, "891185129") self.assertEqual(record.sequence[15].acc, "CD471796.1") self.assertEqual(record.sequence[15].nid, "g31393064") self.assertEqual(record.sequence[15].clone, "LeukoS6_2_D05_A028") self.assertEqual(record.sequence[15].end, "3'") self.assertEqual(record.sequence[15].lid, "13779") self.assertEqual(record.sequence[15].seqtype, "EST") self.assertEqual(record.sequence[15].trace, "891194917") self.assertEqual(record.sequence[16].acc, "CD471724.1") self.assertEqual(record.sequence[16].nid, "g31392992") self.assertEqual(record.sequence[16].clone, "LeukoS6_4_F09_A028") self.assertEqual(record.sequence[16].end, "5'") self.assertEqual(record.sequence[16].lid, "13779") self.assertEqual(record.sequence[16].seqtype, "EST") self.assertEqual(record.sequence[16].trace, "891195058") self.assertEqual(record.sequence[17].acc, "CD471610.1") self.assertEqual(record.sequence[17].nid, "g31392878") self.assertEqual(record.sequence[17].clone, "LeukoS6_4_F09_A028") self.assertEqual(record.sequence[17].end, "3'") self.assertEqual(record.sequence[17].lid, "13779") self.assertEqual(record.sequence[17].seqtype, "EST") self.assertEqual(record.sequence[17].trace, "891194846") self.assertEqual(record.sequence[18].acc, "CD535233.1") self.assertEqual(record.sequence[18].nid, "g31577648") self.assertEqual(record.sequence[18].clone, "LeukoN5_1_B08_A027") self.assertEqual(record.sequence[18].end, "5'") self.assertEqual(record.sequence[18].lid, "13843") self.assertEqual(record.sequence[18].seqtype, "EST") self.assertEqual(record.sequence[18].trace, "891188752") self.assertEqual(record.sequence[19].acc, "CD464482.1") self.assertEqual(record.sequence[19].nid, "g31385750") self.assertEqual(record.sequence[19].clone, "LeukoN4_4_D01_A026") self.assertEqual(record.sequence[19].end, "3'") self.assertEqual(record.sequence[19].lid, "13771") self.assertEqual(record.sequence[19].seqtype, "EST") self.assertEqual(record.sequence[19].trace, "891187846") self.assertEqual(record.sequence[20].acc, "CD468770.1") self.assertEqual(record.sequence[20].nid, "g31390038") self.assertEqual(record.sequence[20].clone, "LeukoS3_5_D03_A025") self.assertEqual(record.sequence[20].end, "5'") self.assertEqual(record.sequence[20].lid, "13775") self.assertEqual(record.sequence[20].seqtype, "EST") self.assertEqual(record.sequence[20].trace, "891192280") self.assertEqual(record.sequence[21].acc, "CD470966.1") self.assertEqual(record.sequence[21].nid, "g31392234") self.assertEqual(record.sequence[21].clone, "LeukoS5_3_F05_A027") self.assertEqual(record.sequence[21].end, "5'") self.assertEqual(record.sequence[21].lid, "13778") self.assertEqual(record.sequence[21].seqtype, "EST") self.assertEqual(record.sequence[21].trace, "891193981") self.assertEqual(record.sequence[22].acc, "CD536398.1") self.assertEqual(record.sequence[22].nid, "g31578813") self.assertEqual(record.sequence[22].clone, "LeukoN6_7_C09_A028") self.assertEqual(record.sequence[22].end, "5'") self.assertEqual(record.sequence[22].lid, "13844") self.assertEqual(record.sequence[22].seqtype, "EST") self.assertEqual(record.sequence[22].trace, "891184341") self.assertEqual(record.sequence[23].acc, "CD535162.1") self.assertEqual(record.sequence[23].nid, "g31577577") self.assertEqual(record.sequence[23].clone, "LeukoN5_1_E01_A027") self.assertEqual(record.sequence[23].end, "3'") self.assertEqual(record.sequence[23].lid, "13843") self.assertEqual(record.sequence[23].seqtype, "EST") self.assertEqual(record.sequence[23].trace, "891188481") self.assertEqual(record.sequence[24].acc, "CD536377.1") self.assertEqual(record.sequence[24].nid, "g31578792") self.assertEqual(record.sequence[24].clone, "LeukoN6_7_C09_A028") self.assertEqual(record.sequence[24].end, "3'") self.assertEqual(record.sequence[24].lid, "13844") self.assertEqual(record.sequence[24].seqtype, "EST") self.assertEqual(record.sequence[24].trace, "891184713") self.assertEqual(record.sequence[25].acc, "CX603705.1") self.assertEqual(record.sequence[25].nid, "g57720427") self.assertEqual(record.sequence[25].clone, "CT02036A2C09") self.assertEqual(record.sequence[25].lid, "16895") self.assertEqual(record.sequence[25].seqtype, "EST") self.assertEqual(record.sequence[26].acc, "CD470556.1") self.assertEqual(record.sequence[26].nid, "g31391824") self.assertEqual(record.sequence[26].clone, "LeukoS4_5_C09_A026") self.assertEqual(record.sequence[26].end, "5'") self.assertEqual(record.sequence[26].lid, "13777") self.assertEqual(record.sequence[26].seqtype, "EST") self.assertEqual(record.sequence[26].trace, "891193234") self.assertEqual(record.sequence[27].acc, "CD466384.1") self.assertEqual(record.sequence[27].nid, "g31387652") self.assertEqual(record.sequence[27].clone, "LeukoN2_3_A06_A024") self.assertEqual(record.sequence[27].end, "5'") self.assertEqual(record.sequence[27].lid, "13773") self.assertEqual(record.sequence[27].seqtype, "EST") self.assertEqual(record.sequence[27].trace, "891186500") self.assertEqual(record.sequence[28].acc, "CD472213.1") self.assertEqual(record.sequence[28].nid, "g31393481") self.assertEqual(record.sequence[28].clone, "LeukoS6_1_C10_A028") self.assertEqual(record.sequence[28].end, "5'") self.assertEqual(record.sequence[28].lid, "13779") self.assertEqual(record.sequence[28].seqtype, "EST") self.assertEqual(record.sequence[28].trace, "891194841") self.assertEqual(record.sequence[29].acc, "DN510913.1") self.assertEqual(record.sequence[29].nid, "g60721103") self.assertEqual(record.sequence[29].clone, "HL02021A2C09") self.assertEqual(record.sequence[29].lid, "17147") self.assertEqual(record.sequence[29].seqtype, "EST") self.assertEqual(record.sequence[30].acc, "CD472329.1") self.assertEqual(record.sequence[30].nid, "g31393597") self.assertEqual(record.sequence[30].clone, "LeukoS6_5_H05_A028") self.assertEqual(record.sequence[30].end, "3'") self.assertEqual(record.sequence[30].lid, "13779") self.assertEqual(record.sequence[30].seqtype, "EST") self.assertEqual(record.sequence[30].trace, "891195397") self.assertEqual(record.sequence[31].acc, "CD536804.1") self.assertEqual(record.sequence[31].nid, "g31579219") self.assertEqual(record.sequence[31].clone, "LeukoN6_6_F12_A028") self.assertEqual(record.sequence[31].end, "3'") self.assertEqual(record.sequence[31].lid, "13844") self.assertEqual(record.sequence[31].seqtype, "EST") self.assertEqual(record.sequence[31].trace, "891184838") self.assertEqual(record.sequence[32].acc, "CD466071.1") self.assertEqual(record.sequence[32].nid, "g31387339") self.assertEqual(record.sequence[32].clone, "LeukoN2_1_E06_A024") self.assertEqual(record.sequence[32].end, "5'") self.assertEqual(record.sequence[32].lid, "13773") self.assertEqual(record.sequence[32].seqtype, "EST") self.assertEqual(record.sequence[32].trace, "891186571") self.assertEqual(record.sequence[33].acc, "CD471909.1") self.assertEqual(record.sequence[33].nid, "g31393177") self.assertEqual(record.sequence[33].clone, "LeukoS6_2_D05_A028") self.assertEqual(record.sequence[33].end, "5'") self.assertEqual(record.sequence[33].lid, "13779") self.assertEqual(record.sequence[33].seqtype, "EST") self.assertEqual(record.sequence[33].trace, "891195132") self.assertEqual(record.sequence[34].acc, "CD465985.1") self.assertEqual(record.sequence[34].nid, "g31387253") self.assertEqual(record.sequence[34].clone, "LeukoN2_1_E06_A024") self.assertEqual(record.sequence[34].end, "3'") self.assertEqual(record.sequence[34].lid, "13773") self.assertEqual(record.sequence[34].seqtype, "EST") self.assertEqual(record.sequence[34].trace, "891186530") self.assertEqual(record.sequence[35].acc, "CD471244.1") self.assertEqual(record.sequence[35].nid, "g31392512") self.assertEqual(record.sequence[35].clone, "LeukoS5_1_F09_A027") self.assertEqual(record.sequence[35].end, "5'") self.assertEqual(record.sequence[35].lid, "13778") self.assertEqual(record.sequence[35].seqtype, "EST") self.assertEqual(record.sequence[35].trace, "891193761") self.assertEqual(record.sequence[36].acc, "DN508615.1") self.assertEqual(record.sequence[36].nid, "g60718805") self.assertEqual(record.sequence[36].clone, "HL02013A1F04") self.assertEqual(record.sequence[36].lid, "17147") self.assertEqual(record.sequence[36].seqtype, "EST") self.assertEqual(record.sequence[37].acc, "CD465146.1") self.assertEqual(record.sequence[37].nid, "g31386414") self.assertEqual(record.sequence[37].clone, "LeukoN1_2_E04_A023") self.assertEqual(record.sequence[37].end, "3'") self.assertEqual(record.sequence[37].lid, "13772") self.assertEqual(record.sequence[37].seqtype, "EST") self.assertEqual(record.sequence[37].trace, "891185503") self.assertEqual(record.sequence[38].acc, "CD465620.1") self.assertEqual(record.sequence[38].nid, "g31386888") self.assertEqual(record.sequence[38].clone, "LeukoN1_6_E09_A023") self.assertEqual(record.sequence[38].end, "3'") self.assertEqual(record.sequence[38].lid, "13772") self.assertEqual(record.sequence[38].seqtype, "EST") self.assertEqual(record.sequence[38].trace, "891184965") self.assertEqual(record.sequence[39].acc, "CD472042.1") self.assertEqual(record.sequence[39].nid, "g31393310") self.assertEqual(record.sequence[39].clone, "LeukoS6_3_F02_A028") self.assertEqual(record.sequence[39].end, "5'") self.assertEqual(record.sequence[39].lid, "13779") self.assertEqual(record.sequence[39].seqtype, "EST") self.assertEqual(record.sequence[39].trace, "891194801") self.assertEqual(record.sequence[40].acc, "CD471148.1") self.assertEqual(record.sequence[40].nid, "g31392416") self.assertEqual(record.sequence[40].clone, "LeukoS5_4_F11_A027") self.assertEqual(record.sequence[40].end, "5'") self.assertEqual(record.sequence[40].lid, "13778") self.assertEqual(record.sequence[40].seqtype, "EST") self.assertEqual(record.sequence[40].trace, "891194177") self.assertEqual(record.sequence[41].acc, "CD466241.1") self.assertEqual(record.sequence[41].nid, "g31387509") self.assertEqual(record.sequence[41].clone, "LeukoN2_3_A06_A024") self.assertEqual(record.sequence[41].end, "3'") self.assertEqual(record.sequence[41].lid, "13773") self.assertEqual(record.sequence[41].seqtype, "EST") self.assertEqual(record.sequence[41].trace, "891186007") self.assertEqual(record.sequence[42].acc, "CD472182.1") self.assertEqual(record.sequence[42].nid, "g31393450") self.assertEqual(record.sequence[42].clone, "LeukoS6_1_H10_A028") self.assertEqual(record.sequence[42].end, "5'") self.assertEqual(record.sequence[42].lid, "13779") self.assertEqual(record.sequence[42].seqtype, "EST") self.assertEqual(record.sequence[42].trace, "891194593") self.assertEqual(record.sequence[43].acc, "CD470462.1") self.assertEqual(record.sequence[43].nid, "g31391730") self.assertEqual(record.sequence[43].clone, "LeukoS4_5_C12_A026") self.assertEqual(record.sequence[43].end, "3'") self.assertEqual(record.sequence[43].lid, "13777") self.assertEqual(record.sequence[43].seqtype, "EST") self.assertEqual(record.sequence[43].trace, "891193322") self.assertEqual(record.sequence[44].acc, "CX596662.1") self.assertEqual(record.sequence[44].nid, "g57706330") self.assertEqual(record.sequence[44].clone, "CT020015A10A06") self.assertEqual(record.sequence[44].lid, "16895") self.assertEqual(record.sequence[44].seqtype, "EST") self.assertEqual(record.sequence[45].acc, "CD536825.1") self.assertEqual(record.sequence[45].nid, "g31579240") self.assertEqual(record.sequence[45].clone, "LeukoN6_6_F12_A028") self.assertEqual(record.sequence[45].end, "5'") self.assertEqual(record.sequence[45].lid, "13844") self.assertEqual(record.sequence[45].seqtype, "EST") self.assertEqual(record.sequence[45].trace, "891184460") self.assertEqual(record.sequence[46].acc, "CD471373.1") self.assertEqual(record.sequence[46].nid, "g31392641") self.assertEqual(record.sequence[46].clone, "LeukoS5_5_H05_A027") self.assertEqual(record.sequence[46].end, "3'") self.assertEqual(record.sequence[46].lid, "13778") self.assertEqual(record.sequence[46].seqtype, "EST") self.assertEqual(record.sequence[46].trace, "891194564") self.assertEqual(record.sequence[47].acc, "CD470875.1") self.assertEqual(record.sequence[47].nid, "g31392143") self.assertEqual(record.sequence[47].clone, "LeukoS5_3_F05_A027") self.assertEqual(record.sequence[47].end, "3'") self.assertEqual(record.sequence[47].lid, "13778") self.assertEqual(record.sequence[47].seqtype, "EST") self.assertEqual(record.sequence[47].trace, "891193793") self.assertEqual(record.sequence[48].acc, "CD470392.1") self.assertEqual(record.sequence[48].nid, "g31391660") self.assertEqual(record.sequence[48].clone, "LeukoS4_4_G05_A026") self.assertEqual(record.sequence[48].end, "3'") self.assertEqual(record.sequence[48].lid, "13777") self.assertEqual(record.sequence[48].seqtype, "EST") self.assertEqual(record.sequence[48].trace, "891193723") self.assertEqual(record.sequence[49].acc, "DN509023.1") self.assertEqual(record.sequence[49].nid, "g60719213") self.assertEqual(record.sequence[49].clone, "HL02014B1D10") self.assertEqual(record.sequence[49].lid, "17147") self.assertEqual(record.sequence[49].seqtype, "EST") self.assertEqual(record.sequence[50].acc, "CD471226.1") self.assertEqual(record.sequence[50].nid, "g31392494") self.assertEqual(record.sequence[50].clone, "LeukoS5_1_F09_A027") self.assertEqual(record.sequence[50].end, "3'") self.assertEqual(record.sequence[50].lid, "13778") self.assertEqual(record.sequence[50].seqtype, "EST") self.assertEqual(record.sequence[50].trace, "891194172") self.assertEqual(record.sequence[51].acc, "CD470547.1") self.assertEqual(record.sequence[51].nid, "g31391815") self.assertEqual(record.sequence[51].clone, "LeukoS4_5_C12_A026") self.assertEqual(record.sequence[51].end, "5'") self.assertEqual(record.sequence[51].lid, "13777") self.assertEqual(record.sequence[51].seqtype, "EST") self.assertEqual(record.sequence[51].trace, "891193220") self.assertEqual(record.sequence[52].acc, "CX593399.1") self.assertEqual(record.sequence[52].nid, "g57699803") self.assertEqual(record.sequence[52].clone, "CT020005A10B06") self.assertEqual(record.sequence[52].lid, "16895") self.assertEqual(record.sequence[52].seqtype, "EST") self.assertEqual(record.sequence[53].acc, "CD465261.1") self.assertEqual(record.sequence[53].nid, "g31386529") self.assertEqual(record.sequence[53].clone, "LeukoN1_2_E04_A023") self.assertEqual(record.sequence[53].end, "5'") self.assertEqual(record.sequence[53].lid, "13772") self.assertEqual(record.sequence[53].seqtype, "EST") self.assertEqual(record.sequence[53].trace, "891185735") self.assertEqual(record.sequence[54].acc, "CD470468.1") self.assertEqual(record.sequence[54].nid, "g31391736") self.assertEqual(record.sequence[54].clone, "LeukoS4_5_C09_A026") self.assertEqual(record.sequence[54].end, "3'") self.assertEqual(record.sequence[54].lid, "13777") self.assertEqual(record.sequence[54].seqtype, "EST") self.assertEqual(record.sequence[54].trace, "891193330") self.assertEqual(record.sequence[55].acc, "CX594874.1") self.assertEqual(record.sequence[55].nid, "g57702753") self.assertEqual(record.sequence[55].clone, "CT020009B10E10") self.assertEqual(record.sequence[55].lid, "16895") self.assertEqual(record.sequence[55].seqtype, "EST") self.assertEqual(record.sequence[56].acc, "CD464520.1") self.assertEqual(record.sequence[56].nid, "g31385788") self.assertEqual(record.sequence[56].clone, "LeukoN4_4_D01_A026") self.assertEqual(record.sequence[56].end, "5'") self.assertEqual(record.sequence[56].lid, "13771") self.assertEqual(record.sequence[56].seqtype, "EST") self.assertEqual(record.sequence[56].trace, "891188021") self.assertEqual(record.sequence[57].acc, "AW260814.1") self.assertEqual(record.sequence[57].nid, "g6636524") self.assertEqual(record.sequence[57].end, "5'") self.assertEqual(record.sequence[57].lid, "2777") self.assertEqual(record.sequence[57].seqtype, "EST") self.assertEqual(record.sequence[58].acc, "CD465691.1") self.assertEqual(record.sequence[58].nid, "g31386959") self.assertEqual(record.sequence[58].clone, "LeukoN1_6_E09_A023") self.assertEqual(record.sequence[58].end, "5'") self.assertEqual(record.sequence[58].lid, "13772") self.assertEqual(record.sequence[58].seqtype, "EST") self.assertEqual(record.sequence[58].trace, "891185089") self.assertEqual(record.sequence[59].acc, "CX595434.1") self.assertEqual(record.sequence[59].nid, "g57703875") self.assertEqual(record.sequence[59].clone, "CT020011A20F11") self.assertEqual(record.sequence[59].lid, "16895") self.assertEqual(record.sequence[59].seqtype, "EST") self.assertEqual(record.sequence[60].acc, "CD464759.1") self.assertEqual(record.sequence[60].nid, "g31386027") self.assertEqual(record.sequence[60].clone, "LeukoN4_6_A09_A026") self.assertEqual(record.sequence[60].end, "5'") self.assertEqual(record.sequence[60].lid, "13771") self.assertEqual(record.sequence[60].seqtype, "EST") self.assertEqual(record.sequence[60].trace, "891188174") self.assertEqual(record.sequence[61].acc, "CD469441.1") self.assertEqual(record.sequence[61].nid, "g31390709") self.assertEqual(record.sequence[61].clone, "LeukoS2_3_F03_A024") self.assertEqual(record.sequence[61].end, "5'") self.assertEqual(record.sequence[61].lid, "13776") self.assertEqual(record.sequence[61].seqtype, "EST") self.assertEqual(record.sequence[61].trace, "946412740") self.assertEqual(record.sequence[62].acc, "CD471416.1") self.assertEqual(record.sequence[62].nid, "g31392684") self.assertEqual(record.sequence[62].clone, "LeukoS5_5_H05_A027") self.assertEqual(record.sequence[62].end, "5'") self.assertEqual(record.sequence[62].lid, "13778") self.assertEqual(record.sequence[62].seqtype, "EST") self.assertEqual(record.sequence[62].trace, "891194460") self.assertEqual(record.sequence[63].acc, "CD536439.1") self.assertEqual(record.sequence[63].nid, "g31578854") self.assertEqual(record.sequence[63].clone, "LeukoN6_7_B04_A028") self.assertEqual(record.sequence[63].end, "5'") self.assertEqual(record.sequence[63].lid, "13844") self.assertEqual(record.sequence[63].seqtype, "EST") self.assertEqual(record.sequence[63].trace, "891184662") self.assertEqual(record.sequence[64].acc, "CX605282.1") self.assertEqual(record.sequence[64].nid, "g57723597") self.assertEqual(record.sequence[64].clone, "CT02041A1A07") self.assertEqual(record.sequence[64].lid, "16895") self.assertEqual(record.sequence[64].seqtype, "EST") self.assertEqual(record.sequence[65].acc, "CD464302.1") self.assertEqual(record.sequence[65].nid, "g31385570") self.assertEqual(record.sequence[65].clone, "LeukoN4_3_B01_A026") self.assertEqual(record.sequence[65].end, "3'") self.assertEqual(record.sequence[65].lid, "13771") self.assertEqual(record.sequence[65].seqtype, "EST") self.assertEqual(record.sequence[65].trace, "891187636") self.assertEqual(record.sequence[66].acc, "CD469295.1") self.assertEqual(record.sequence[66].nid, "g31390563") self.assertEqual(record.sequence[66].clone, "LeukoS2_3_F03_A024") self.assertEqual(record.sequence[66].end, "3'") self.assertEqual(record.sequence[66].lid, "13776") self.assertEqual(record.sequence[66].seqtype, "EST") self.assertEqual(record.sequence[66].trace, "891191446") self.assertEqual(record.sequence[67].acc, "CD470883.1") self.assertEqual(record.sequence[67].nid, "g31392151") self.assertEqual(record.sequence[67].clone, "LeukoS5_3_G08_A027") self.assertEqual(record.sequence[67].end, "3'") self.assertEqual(record.sequence[67].lid, "13778") self.assertEqual(record.sequence[67].seqtype, "EST") self.assertEqual(record.sequence[67].trace, "891193865") self.assertEqual(record.sequence[68].acc, "CD468749.1") self.assertEqual(record.sequence[68].nid, "g31390017") self.assertEqual(record.sequence[68].clone, "LeukoS3_5_E02_A025") self.assertEqual(record.sequence[68].end, "5'") self.assertEqual(record.sequence[68].lid, "13775") self.assertEqual(record.sequence[68].seqtype, "EST") self.assertEqual(record.sequence[68].trace, "891192160") # Second record record = records.next() self.assertEqual(record.ID, "Eca.2425") self.assertEqual(record.title, "Immunoglobulin-like transcript 11 protein") self.assertEqual(record.symbol, "ILT11B") self.assertEqual(record.cytoband, "10p12") self.assertEqual(record.gene_id, "100034238") self.assertEqual(record.locuslink, "100034238") self.assertEqual(record.homol, True) self.assertEqual(record.express, ["blood", "adult"]) self.assertEqual(len(record.protsim), 11) self.assertEqual(record.protsim[0].org, "10090") self.assertEqual(record.protsim[0].protgi, "156766061") self.assertEqual(record.protsim[0].protid, "NP_001074708.2") self.assertEqual(record.protsim[0].pct, "50.00") self.assertEqual(record.protsim[0].aln, "281") self.assertEqual(record.protsim[1].org, "9606") self.assertEqual(record.protsim[1].protgi, "32490553") self.assertEqual(record.protsim[1].protid, "NP_067073.1") self.assertEqual(record.protsim[1].pct, "62.42") self.assertEqual(record.protsim[1].aln, "296") self.assertEqual(record.protsim[2].org, "13616") self.assertEqual(record.protsim[2].protgi, "126346255") self.assertEqual(record.protsim[2].protid, "XP_001375479.1") self.assertEqual(record.protsim[2].pct, "40.43") self.assertEqual(record.protsim[2].aln, "281") self.assertEqual(record.protsim[3].org, "9615") self.assertEqual(record.protsim[3].protgi, "73947540") self.assertEqual(record.protsim[3].protid, "XP_854148.1") self.assertEqual(record.protsim[3].pct, "42.11") self.assertEqual(record.protsim[3].aln, "303") self.assertEqual(record.protsim[4].org, "9913") self.assertEqual(record.protsim[4].protgi, "194674905") self.assertEqual(record.protsim[4].protid, "XP_001788837.1") self.assertEqual(record.protsim[4].pct, "61.11") self.assertEqual(record.protsim[4].aln, "233") self.assertEqual(record.protsim[5].org, "9258") self.assertEqual(record.protsim[5].protgi, "149631692") self.assertEqual(record.protsim[5].protid, "XP_001516158.1") self.assertEqual(record.protsim[5].pct, "35.65") self.assertEqual(record.protsim[5].aln, "229") self.assertEqual(record.protsim[6].org, "9796") self.assertEqual(record.protsim[6].protgi, "146262003") self.assertEqual(record.protsim[6].protid, "NP_001075996.1") self.assertEqual(record.protsim[6].pct, "100.00") self.assertEqual(record.protsim[6].aln, "279") self.assertEqual(record.protsim[7].org, "10116") self.assertEqual(record.protsim[7].protgi, "109461031") self.assertEqual(record.protsim[7].protid, "XP_001065532.1") self.assertEqual(record.protsim[7].pct, "52.77") self.assertEqual(record.protsim[7].aln, "269") self.assertEqual(record.protsim[8].org, "9544") self.assertEqual(record.protsim[8].protgi, "100818611") self.assertEqual(record.protsim[8].protid, "NP_001035767.1") self.assertEqual(record.protsim[8].pct, "57.35") self.assertEqual(record.protsim[8].aln, "277") self.assertEqual(record.protsim[9].org, "9823") self.assertEqual(record.protsim[9].protgi, "178057314") self.assertEqual(record.protsim[9].protid, "NP_001116615.1") self.assertEqual(record.protsim[9].pct, "43.01") self.assertEqual(record.protsim[9].aln, "278") self.assertEqual(record.protsim[10].org, "9598") self.assertEqual(record.protsim[10].protgi, "58801536") self.assertEqual(record.protsim[10].protid, "NP_001009045.1") self.assertEqual(record.protsim[10].pct, "54.51") self.assertEqual(record.protsim[10].aln, "276") self.assertEqual(len(record.sequence), 9) self.assertEqual(record.sequence[0].acc, "AB120409.1") self.assertEqual(record.sequence[0].nid, "g45597282") self.assertEqual(record.sequence[0].pid, "g45597283") self.assertEqual(record.sequence[0].seqtype, "mRNA") self.assertEqual(record.sequence[1].acc, "NM_001082527.1") self.assertEqual(record.sequence[1].nid, "g146262002") self.assertEqual(record.sequence[1].pid, "g146262003") self.assertEqual(record.sequence[1].seqtype, "mRNA") self.assertEqual(record.sequence[2].acc, "AB120410.1") self.assertEqual(record.sequence[2].nid, "g45597284") self.assertEqual(record.sequence[2].pid, "g45597285") self.assertEqual(record.sequence[2].seqtype, "mRNA") self.assertEqual(record.sequence[3].acc, "AB120411.1") self.assertEqual(record.sequence[3].nid, "g45597286") self.assertEqual(record.sequence[3].pid, "g45597287") self.assertEqual(record.sequence[3].seqtype, "mRNA") self.assertEqual(record.sequence[4].acc, "CD467202.1") self.assertEqual(record.sequence[4].nid, "g31388470") self.assertEqual(record.sequence[4].clone, "LeukoS1_2_D11_A023") self.assertEqual(record.sequence[4].end, "5'") self.assertEqual(record.sequence[4].lid, "13774") self.assertEqual(record.sequence[4].seqtype, "EST") self.assertEqual(record.sequence[4].trace, "891190473") self.assertEqual(record.sequence[5].acc, "CD535974.1") self.assertEqual(record.sequence[5].nid, "g31578389") self.assertEqual(record.sequence[5].clone, "LeukoN6_2_F07_A028") self.assertEqual(record.sequence[5].end, "3'") self.assertEqual(record.sequence[5].lid, "13844") self.assertEqual(record.sequence[5].seqtype, "EST") self.assertEqual(record.sequence[5].trace, "891184067") self.assertEqual(record.sequence[6].acc, "CD469544.1") self.assertEqual(record.sequence[6].nid, "g31390812") self.assertEqual(record.sequence[6].clone, "LeukoS2_4_D05_A024") self.assertEqual(record.sequence[6].end, "5'") self.assertEqual(record.sequence[6].lid, "13776") self.assertEqual(record.sequence[6].seqtype, "EST") self.assertEqual(record.sequence[6].trace, "891191700") self.assertEqual(record.sequence[7].acc, "CD528742.1") self.assertEqual(record.sequence[7].nid, "g31567364") self.assertEqual(record.sequence[7].clone, "LeukoN3_7_F08_A025") self.assertEqual(record.sequence[7].end, "3'") self.assertEqual(record.sequence[7].lid, "13842") self.assertEqual(record.sequence[7].seqtype, "EST") self.assertEqual(record.sequence[7].trace, "891187302") self.assertEqual(record.sequence[8].acc, "CD469487.1") self.assertEqual(record.sequence[8].nid, "g31390755") self.assertEqual(record.sequence[8].clone, "LeukoS2_4_D05_A024") self.assertEqual(record.sequence[8].end, "3'") self.assertEqual(record.sequence[8].lid, "13776") self.assertEqual(record.sequence[8].seqtype, "EST") self.assertEqual(record.sequence[8].trace, "891191801") # Make sure that there are no more records self.assertRaises(StopIteration, records.next) handle.close() def test_read(self): #Start of the UniGene file for Homo sapiens downloaded from: #ftp://ftp.ncbi.nih.gov/repository/UniGene/Homo_sapiens handle = open("UniGene/Hs.2.data") record = UniGene.read(handle) self.assertEqual(record.ID, "Hs.2") self.assertEqual(record.title, "N-acetyltransferase 2 (arylamine N-acetyltransferase)") self.assertEqual(record.symbol, "NAT2") self.assertEqual(record.cytoband, "8p22") self.assertEqual(record.gene_id, "10") self.assertEqual(record.locuslink, "10") self.assertEqual(record.homol, True) self.assertEqual(record.express, ["bone", "connective tissue", "intestine", "liver", "liver tumor", "normal", "soft tissue/muscle tissue tumor", "adult"]) self.assertEqual(record.restr_expr, ["adult"]) self.assertEqual(record.chromosome, "8") self.assertEqual(len(record.sts), 7) self.assertEqual(record.sts[0].acc, "PMC310725P3") self.assertEqual(record.sts[0].unists, "272646") self.assertEqual(record.sts[1].acc, "WIAF-2120") self.assertEqual(record.sts[1].unists, "44576") self.assertEqual(record.sts[2].acc, "G59899") self.assertEqual(record.sts[2].unists, "137181") self.assertEqual(record.sts[3].acc, "G06461") self.assertEqual(record.sts[3].unists, "17088") self.assertEqual(record.sts[4].acc, "GDB:310612") self.assertEqual(record.sts[4].unists, "156422") self.assertEqual(record.sts[5].acc, "GDB:310613") self.assertEqual(record.sts[5].unists, "156423") self.assertEqual(record.sts[6].acc, "GDB:187676") self.assertEqual(record.sts[6].unists, "155563") self.assertEqual(len(record.protsim), 13) self.assertEqual(record.protsim[0].org, "10090") self.assertEqual(record.protsim[0].protgi, "6754794") self.assertEqual(record.protsim[0].protid, "NP_035004.1") self.assertEqual(record.protsim[0].pct, "76.55") self.assertEqual(record.protsim[0].aln, "288") self.assertEqual(record.protsim[1].org, "9796") self.assertEqual(record.protsim[1].protgi, "149742490") self.assertEqual(record.protsim[1].protid, "XP_001487907.1") self.assertEqual(record.protsim[1].pct, "79.66") self.assertEqual(record.protsim[1].aln, "288") self.assertEqual(record.protsim[2].org, "9986") self.assertEqual(record.protsim[2].protgi, "126722851") self.assertEqual(record.protsim[2].protid, "NP_001075655.1") self.assertEqual(record.protsim[2].pct, "76.90") self.assertEqual(record.protsim[2].aln, "288") self.assertEqual(record.protsim[3].org, "9544") self.assertEqual(record.protsim[3].protgi, "113461974") self.assertEqual(record.protsim[3].protid, "NP_001038201.1") self.assertEqual(record.protsim[3].pct, "93.10") self.assertEqual(record.protsim[3].aln, "288") self.assertEqual(record.protsim[4].org, "9606") self.assertEqual(record.protsim[4].protgi, "116295260") self.assertEqual(record.protsim[4].protid, "NP_000006.2") self.assertEqual(record.protsim[4].pct, "100.00") self.assertEqual(record.protsim[4].aln, "288") self.assertEqual(record.protsim[5].org, "7719") self.assertEqual(record.protsim[5].protgi, "198423589") self.assertEqual(record.protsim[5].protid, "XP_002126320.1") self.assertEqual(record.protsim[5].pct, "29.46") self.assertEqual(record.protsim[5].aln, "240") self.assertEqual(record.protsim[6].org, "10116") self.assertEqual(record.protsim[6].protgi, "16758720") self.assertEqual(record.protsim[6].protid, "NP_446306.1") self.assertEqual(record.protsim[6].pct, "75.52") self.assertEqual(record.protsim[6].aln, "288") self.assertEqual(record.protsim[7].org, "13616") self.assertEqual(record.protsim[7].protgi, "126303190") self.assertEqual(record.protsim[7].protid, "XP_001371814.1") self.assertEqual(record.protsim[7].pct, "63.67") self.assertEqual(record.protsim[7].aln, "287") self.assertEqual(record.protsim[8].org, "9031") self.assertEqual(record.protsim[8].protgi, "45384408") self.assertEqual(record.protsim[8].protid, "NP_990671.1") self.assertEqual(record.protsim[8].pct, "57.93") self.assertEqual(record.protsim[8].aln, "288") self.assertEqual(record.protsim[9].org, "9913") self.assertEqual(record.protsim[9].protgi, "115497526") self.assertEqual(record.protsim[9].protid, "NP_001069040.1") self.assertEqual(record.protsim[9].pct, "80.34") self.assertEqual(record.protsim[9].aln, "288") self.assertEqual(record.protsim[10].org, "9258") self.assertEqual(record.protsim[10].protgi, "149640224") self.assertEqual(record.protsim[10].protid, "XP_001508302.1") self.assertEqual(record.protsim[10].pct, "62.37") self.assertEqual(record.protsim[10].aln, "278") self.assertEqual(record.protsim[11].org, "7955") self.assertEqual(record.protsim[11].protgi, "125821897") self.assertEqual(record.protsim[11].protid, "XP_001334322.1") self.assertEqual(record.protsim[11].pct, "43.21") self.assertEqual(record.protsim[11].aln, "279") self.assertEqual(record.protsim[12].org, "9598") self.assertEqual(record.protsim[12].protgi, "114619004") self.assertEqual(record.protsim[12].protid, "XP_519631.2") self.assertEqual(record.protsim[12].pct, "98.28") self.assertEqual(record.protsim[12].aln, "288") self.assertEqual(len(record.sequence), 38) self.assertEqual(record.sequence[0].acc, "BC067218.1") self.assertEqual(record.sequence[0].nid, "g45501306") self.assertEqual(record.sequence[0].pid, "g45501307") self.assertEqual(record.sequence[0].seqtype, "mRNA") self.assertEqual(record.sequence[1].acc, "NM_000015.2") self.assertEqual(record.sequence[1].nid, "g116295259") self.assertEqual(record.sequence[1].pid, "g116295260") self.assertEqual(record.sequence[1].seqtype, "mRNA") self.assertEqual(record.sequence[2].acc, "D90042.1") self.assertEqual(record.sequence[2].nid, "g219415") self.assertEqual(record.sequence[2].pid, "g219416") self.assertEqual(record.sequence[2].seqtype, "mRNA") self.assertEqual(record.sequence[3].acc, "D90040.1") self.assertEqual(record.sequence[3].nid, "g219411") self.assertEqual(record.sequence[3].pid, "g219412") self.assertEqual(record.sequence[3].seqtype, "mRNA") self.assertEqual(record.sequence[4].acc, "BC015878.1") self.assertEqual(record.sequence[4].nid, "g16198419") self.assertEqual(record.sequence[4].pid, "g16198420") self.assertEqual(record.sequence[4].seqtype, "mRNA") self.assertEqual(record.sequence[5].acc, "CR407631.1") self.assertEqual(record.sequence[5].nid, "g47115198") self.assertEqual(record.sequence[5].pid, "g47115199") self.assertEqual(record.sequence[5].seqtype, "mRNA") self.assertEqual(record.sequence[6].acc, "BG569293.1") self.assertEqual(record.sequence[6].nid, "g13576946") self.assertEqual(record.sequence[6].clone, "IMAGE:4722596") self.assertEqual(record.sequence[6].end, "5'") self.assertEqual(record.sequence[6].lid, "6989") self.assertEqual(record.sequence[6].seqtype, "EST") self.assertEqual(record.sequence[6].trace, "44157214") self.assertEqual(record.sequence[7].acc, "AI792606.1") self.assertEqual(record.sequence[7].nid, "g5340322") self.assertEqual(record.sequence[7].clone, "IMAGE:1870937") self.assertEqual(record.sequence[7].end, "5'") self.assertEqual(record.sequence[7].lid, "1079") self.assertEqual(record.sequence[7].seqtype, "EST") self.assertEqual(record.sequence[8].acc, "BG568794.1") self.assertEqual(record.sequence[8].nid, "g13576447") self.assertEqual(record.sequence[8].clone, "IMAGE:4716636") self.assertEqual(record.sequence[8].end, "5'") self.assertEqual(record.sequence[8].lid, "6989") self.assertEqual(record.sequence[8].seqtype, "EST") self.assertEqual(record.sequence[8].trace, "44156817") self.assertEqual(record.sequence[9].acc, "BG533459.1") self.assertEqual(record.sequence[9].nid, "g13524999") self.assertEqual(record.sequence[9].clone, "IMAGE:4072143") self.assertEqual(record.sequence[9].end, "5'") self.assertEqual(record.sequence[9].lid, "6989") self.assertEqual(record.sequence[9].seqtype, "EST") self.assertEqual(record.sequence[9].trace, "44404609") self.assertEqual(record.sequence[10].acc, "BG568400.1") self.assertEqual(record.sequence[10].nid, "g13576053") self.assertEqual(record.sequence[10].clone, "IMAGE:4716802") self.assertEqual(record.sequence[10].end, "5'") self.assertEqual(record.sequence[10].lid, "6989") self.assertEqual(record.sequence[10].seqtype, "EST") self.assertEqual(record.sequence[10].trace, "44156561") self.assertEqual(record.sequence[11].acc, "BG618195.1") self.assertEqual(record.sequence[11].nid, "g13669566") self.assertEqual(record.sequence[11].clone, "IMAGE:4767316") self.assertEqual(record.sequence[11].end, "5'") self.assertEqual(record.sequence[11].lid, "6989") self.assertEqual(record.sequence[11].seqtype, "EST") self.assertEqual(record.sequence[11].trace, "45338366") self.assertEqual(record.sequence[12].acc, "BG563731.1") self.assertEqual(record.sequence[12].nid, "g13571383") self.assertEqual(record.sequence[12].clone, "IMAGE:4712210") self.assertEqual(record.sequence[12].end, "5'") self.assertEqual(record.sequence[12].lid, "6989") self.assertEqual(record.sequence[12].seqtype, "EST") self.assertEqual(record.sequence[12].trace, "44153506") self.assertEqual(record.sequence[13].acc, "AI733799.1") self.assertEqual(record.sequence[13].nid, "g5054912") self.assertEqual(record.sequence[13].clone, "IMAGE:1870937") self.assertEqual(record.sequence[13].end, "3'") self.assertEqual(record.sequence[13].lid, "1079") self.assertEqual(record.sequence[13].seqtype, "EST") self.assertEqual(record.sequence[14].acc, "BG569272.1") self.assertEqual(record.sequence[14].nid, "g13576925") self.assertEqual(record.sequence[14].clone, "IMAGE:4722638") self.assertEqual(record.sequence[14].end, "5'") self.assertEqual(record.sequence[14].lid, "6989") self.assertEqual(record.sequence[14].seqtype, "EST") self.assertEqual(record.sequence[14].trace, "44157191") self.assertEqual(record.sequence[15].acc, "AJ581147.1") self.assertEqual(record.sequence[15].nid, "g73759744") self.assertEqual(record.sequence[15].pid, "g73759745") self.assertEqual(record.sequence[15].seqtype, "mRNA") self.assertEqual(record.sequence[16].acc, "BU624903.1") self.assertEqual(record.sequence[16].nid, "g23291118") self.assertEqual(record.sequence[16].clone, "UI-H-FG1-bgl-g-02-0-UI") self.assertEqual(record.sequence[16].end, "3'") self.assertEqual(record.sequence[16].lid, "11914") self.assertEqual(record.sequence[16].seqtype, "EST") self.assertEqual(record.sequence[16].trace, "159705553") self.assertEqual(record.sequence[17].acc, "BG617259.1") self.assertEqual(record.sequence[17].nid, "g13668630") self.assertEqual(record.sequence[17].clone, "IMAGE:4734378") self.assertEqual(record.sequence[17].end, "5'") self.assertEqual(record.sequence[17].lid, "6989") self.assertEqual(record.sequence[17].seqtype, "EST") self.assertEqual(record.sequence[17].trace, "44229423") self.assertEqual(record.sequence[18].acc, "CV029049.1") self.assertEqual(record.sequence[18].nid, "g51487181") self.assertEqual(record.sequence[18].end, "5'") self.assertEqual(record.sequence[18].lid, "16264") self.assertEqual(record.sequence[18].seqtype, "EST") self.assertEqual(record.sequence[19].acc, "BP264356.1") self.assertEqual(record.sequence[19].nid, "g52179587") self.assertEqual(record.sequence[19].clone, "HSI15615") self.assertEqual(record.sequence[19].end, "5'") self.assertEqual(record.sequence[19].lid, "16400") self.assertEqual(record.sequence[19].seqtype, "EST") self.assertEqual(record.sequence[20].acc, "BP262043.1") self.assertEqual(record.sequence[20].nid, "g52177274") self.assertEqual(record.sequence[20].clone, "HSI05750") self.assertEqual(record.sequence[20].end, "5'") self.assertEqual(record.sequence[20].lid, "16400") self.assertEqual(record.sequence[20].seqtype, "EST") self.assertEqual(record.sequence[21].acc, "BP262787.1") self.assertEqual(record.sequence[21].nid, "g52178018") self.assertEqual(record.sequence[21].clone, "HSI08034") self.assertEqual(record.sequence[21].end, "5'") self.assertEqual(record.sequence[21].lid, "16400") self.assertEqual(record.sequence[21].seqtype, "EST") self.assertEqual(record.sequence[22].acc, "CB161982.1") self.assertEqual(record.sequence[22].nid, "g28148108") self.assertEqual(record.sequence[22].clone, "L17N670205n1-15-F12") self.assertEqual(record.sequence[22].end, "5'") self.assertEqual(record.sequence[22].lid, "12542") self.assertEqual(record.sequence[22].seqtype, "EST") self.assertEqual(record.sequence[23].acc, "BX095770.1") self.assertEqual(record.sequence[23].nid, "g27827877") self.assertEqual(record.sequence[23].clone, "IMAGp998I184581_,_IMAGE:1870937") self.assertEqual(record.sequence[23].lid, "1079") self.assertEqual(record.sequence[23].seqtype, "EST") self.assertEqual(record.sequence[24].acc, "AI262683.1") self.assertEqual(record.sequence[24].nid, "g3870886") self.assertEqual(record.sequence[24].clone, "IMAGE:1870937") self.assertEqual(record.sequence[24].end, "3'") self.assertEqual(record.sequence[24].lid, "1079") self.assertEqual(record.sequence[24].seqtype, "EST") self.assertEqual(record.sequence[25].acc, "AI460128.1") self.assertEqual(record.sequence[25].nid, "g4313009") self.assertEqual(record.sequence[25].clone, "IMAGE:2151449") self.assertEqual(record.sequence[25].end, "3'") self.assertEqual(record.sequence[25].lid, "1556") self.assertEqual(record.sequence[25].seqtype, "EST") self.assertEqual(record.sequence[26].acc, "CB161860.1") self.assertEqual(record.sequence[26].nid, "g28147986") self.assertEqual(record.sequence[26].clone, "L17N670205n1-41-A04") self.assertEqual(record.sequence[26].end, "5'") self.assertEqual(record.sequence[26].lid, "12542") self.assertEqual(record.sequence[26].seqtype, "EST") self.assertEqual(record.sequence[27].acc, "AJ581145.1") self.assertEqual(record.sequence[27].nid, "g73759740") self.assertEqual(record.sequence[27].pid, "g73759741") self.assertEqual(record.sequence[27].seqtype, "mRNA") self.assertEqual(record.sequence[28].acc, "EG327405.1") self.assertEqual(record.sequence[28].nid, "g116004924") self.assertEqual(record.sequence[28].clone, "MGC12part.1.3.L1.1.D01.") self.assertEqual(record.sequence[28].lid, "17261") self.assertEqual(record.sequence[28].seqtype, "EST") self.assertEqual(record.sequence[29].acc, "AJ581144.1") self.assertEqual(record.sequence[29].nid, "g73759738") self.assertEqual(record.sequence[29].pid, "g73759739") self.assertEqual(record.sequence[29].seqtype, "mRNA") self.assertEqual(record.sequence[30].acc, "EG327340.1") self.assertEqual(record.sequence[30].nid, "g116004859") self.assertEqual(record.sequence[30].clone, "MGC12part.1.2.L1.1.D01.") self.assertEqual(record.sequence[30].lid, "17261") self.assertEqual(record.sequence[30].seqtype, "EST") self.assertEqual(record.sequence[31].acc, "AV658623.1") self.assertEqual(record.sequence[31].nid, "g9879637") self.assertEqual(record.sequence[31].clone, "GLCFOD10") self.assertEqual(record.sequence[31].end, "3'") self.assertEqual(record.sequence[31].lid, "5601") self.assertEqual(record.sequence[31].seqtype, "EST") self.assertEqual(record.sequence[32].acc, "AV658656.1") self.assertEqual(record.sequence[32].nid, "g9879670") self.assertEqual(record.sequence[32].clone, "GLCFOG07") self.assertEqual(record.sequence[32].end, "3'") self.assertEqual(record.sequence[32].lid, "5601") self.assertEqual(record.sequence[32].seqtype, "EST") self.assertEqual(record.sequence[33].acc, "AV684197.2") self.assertEqual(record.sequence[33].nid, "g55943471") self.assertEqual(record.sequence[33].clone, "GKCFZH06") self.assertEqual(record.sequence[33].end, "5'") self.assertEqual(record.sequence[33].lid, "6533") self.assertEqual(record.sequence[33].seqtype, "EST") self.assertEqual(record.sequence[34].acc, "AJ581146.1") self.assertEqual(record.sequence[34].nid, "g73759742") self.assertEqual(record.sequence[34].pid, "g73759743") self.assertEqual(record.sequence[34].seqtype, "mRNA") self.assertEqual(record.sequence[35].acc, "EG327618.1") self.assertEqual(record.sequence[35].nid, "g116005137") self.assertEqual(record.sequence[35].clone, "MGC11part.2.3.L1.1.E06.") self.assertEqual(record.sequence[35].lid, "17261") self.assertEqual(record.sequence[35].seqtype, "EST") self.assertEqual(record.sequence[36].acc, "BG204539.1") self.assertEqual(record.sequence[36].nid, "g13726226") self.assertEqual(record.sequence[36].lid, "8655") self.assertEqual(record.sequence[36].seqtype, "EST") self.assertEqual(record.sequence[37].acc, "AU099534.1") self.assertEqual(record.sequence[37].nid, "g13550663") self.assertEqual(record.sequence[37].clone, "HSI08034") self.assertEqual(record.sequence[37].end, "5'") self.assertEqual(record.sequence[37].lid, "8800") self.assertEqual(record.sequence[37].seqtype, "EST") handle.close() if __name__ == "__main__": runner = unittest.TextTestRunner(verbosity = 2) unittest.main(testRunner=runner)