BLASTN 2.0.11 [Jan-20-2000] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|1347201|gb|G24969|G24969 human STS EST21946.gi|1375315|gb|G27065|G27065 human STS SHGC-31731. (331 letters) Database: data/sts 87,792 sequences; 31,998,854 total letters Searching...................................................done >gi|1347201|gb|G24969|G24969 human STS EST21946. >gi|1375315|gb|G27065|G27065 human STS SHGC-31731. Length = 331 Score = 656 bits (331), Expect = 0.0 Identities = 331/331 (100%) Strand = Plus / Plus Query: 1 cctccaccctctcatgagcaacaggatatgtgaaagtacttgcagccagaagcaaaacca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cctccaccctctcatgagcaacaggatatgtgaaagtacttgcagccagaagcaaaacca 60 Query: 61 caatcctcgggtgctagatggagctccccaaggagcagagaggaaaaggcaggaggagag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 caatcctcgggtgctagatggagctccccaaggagcagagaggaaaaggcaggaggagag 120 Query: 121 ggccaggcagcagggatggagactaagtttggcccaaggctgcccgcaagcactgatgcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ggccaggcagcagggatggagactaagtttggcccaaggctgcccgcaagcactgatgcc 180 Query: 181 atcatgccctctggtaggtgtctatttctgtctgaaccagaaatacaccaagctccacac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atcatgccctctggtaggtgtctatttctgtctgaaccagaaatacaccaagctccacac 240 Query: 241 atgggggctttgctggcttcgacatcactggttcaactatgtcactgctttgttatattt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 atgggggctttgctggcttcgacatcactggttcaactatgtcactgctttgttatattt 300 Query: 301 agtgctccagaacctcaggttccttcagatt 331 ||||||||||||||||||||||||||||||| Sbjct: 301 agtgctccagaacctcaggttccttcagatt 331 >gi|2665277|emb|AL010115|HSPE77H4 H.sapiens flow-sorted chromosome 1 HindIII fragment, SC1pE77H4, sequence tagged site [Homo sapiens] Length = 554 Score = 34.2 bits (17), Expect = 0.49 Identities = 17/17 (100%) Strand = Plus / Minus Query: 123 ccaggcagcagggatgg 139 ||||||||||||||||| Sbjct: 434 ccaggcagcagggatgg 418 >gi|4757440|gb|G49267.1|G49267 stbK343C1_96809 chromosome 22 genomic clone Homo sapiens STS genomic clone 343C1, sequence tagged site Length = 360 Score = 32.2 bits (16), Expect = 1.9 Identities = 22/24 (91%) Strand = Plus / Minus Query: 112 ggaggagagggccaggcagcaggg 135 ||||||||||| | |||||||||| Sbjct: 287 ggaggagaggggctggcagcaggg 264 >gi|4493602|gb|G47248.1|G47248 Z17392_1 Zebrafish AB Danio rerio STS genomic clone Z17392 5', sequence tagged site Length = 454 Score = 32.2 bits (16), Expect = 1.9 Identities = 16/16 (100%) Strand = Plus / Plus Query: 48 agaagcaaaaccacaa 63 |||||||||||||||| Sbjct: 434 agaagcaaaaccacaa 449 >gi|6120731|gb|G55412.1|G55412 SHGC-100745 Human Homo sapiens STS genomic, sequence tagged site Length = 652 Score = 32.2 bits (16), Expect = 1.9 Identities = 16/16 (100%) Strand = Plus / Minus Query: 99 agaggaaaaggcagga 114 |||||||||||||||| Sbjct: 431 agaggaaaaggcagga 416 >gi|1235411|emb|Z53965|HSC009WH1 H.sapiens (D2S2321) DNA segment containing (CA) repeat; clone AFMc009wh1; single read, sequence tagged site [Homo sapiens] Length = 382 Score = 32.2 bits (16), Expect = 1.9 Identities = 16/16 (100%) Strand = Plus / Plus Query: 97 agagaggaaaaggcag 112 |||||||||||||||| Sbjct: 107 agagaggaaaaggcag 122 >gi|939357|gb|G08807|G08807 human STS CHLC.GATA70E11.P18111 clone GATA70E11 Length = 643 Score = 32.2 bits (16), Expect = 1.9 Identities = 16/16 (100%) Strand = Plus / Minus Query: 100 gaggaaaaggcaggag 115 |||||||||||||||| Sbjct: 482 gaggaaaaggcaggag 467 >gi|1342139|gb|G21813|G21813 human STS WI-12408. Length = 418 Score = 32.2 bits (16), Expect = 1.9 Identities = 16/16 (100%) Strand = Plus / Minus Query: 47 cagaagcaaaaccaca 62 |||||||||||||||| Sbjct: 193 cagaagcaaaaccaca 178 >gi|719782|gb|G02824|G02824 human STS WI-1312. Length = 349 Score = 32.2 bits (16), Expect = 1.9 Identities = 16/16 (100%) Strand = Plus / Plus Query: 286 tgctttgttatattta 301 |||||||||||||||| Sbjct: 111 tgctttgttatattta 126 >gi|5902652|gb|G54536.1|G54536 Xq4072 KWOK Homo sapiens STS genomic, sequence tagged site Length = 997 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 1 cctccaccctctcat 15 ||||||||||||||| Sbjct: 618 cctccaccctctcat 604 >gi|5566455|gb|AF167528.1|AF167528 Mus musculus chromosome 10 STS D10Jhu41, sequence tagged site Length = 749 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 117 agagggccaggcagc 131 ||||||||||||||| Sbjct: 487 agagggccaggcagc 501 >gi|5566418|gb|AF167504.1|AF167504 Mus musculus chromosome 10 STS D10Jhu59, sequence tagged site Length = 550 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 81 gagctccccaaggag 95 ||||||||||||||| Sbjct: 278 gagctccccaaggag 264 >gi|5565757|gb|AF096569.1|AF096569 Rattus norvegicus clone D5Uwm59, sequence tagged site Length = 580 Score = 30.2 bits (15), Expect = 7.6 Identities = 21/23 (91%) Strand = Plus / Plus Query: 95 gcagagaggaaaaggcaggagga 117 ||||| |||| |||||||||||| Sbjct: 84 gcagacaggagaaggcaggagga 106 >gi|4757436|gb|G49263.1|G49263 stbK343C1_70109 chromosome 22 genomic clone Homo sapiens STS genomic clone 343C1, sequence tagged site Length = 359 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 125 aggcagcagggatgg 139 ||||||||||||||| Sbjct: 58 aggcagcagggatgg 44 >gi|4518571|dbj|AU028648.1|AU028648 Rattus norvegicus, OTSUKA clone, OT10.41/02694, microsatellite sequence, sequence tagged site Length = 465 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 184 atgccctctggtagg 198 ||||||||||||||| Sbjct: 114 atgccctctggtagg 100 >gi|6123014|gb|G57845.1|G57845 SHGC-103599 Human Homo sapiens STS genomic, sequence tagged site Length = 680 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 134 ggatggagactaagt 148 ||||||||||||||| Sbjct: 451 ggatggagactaagt 465 >gi|6124406|gb|G59237.1|G59237 SHGC-110189 Human Homo sapiens STS genomic, sequence tagged site Length = 505 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 128 cagcagggatggaga 142 ||||||||||||||| Sbjct: 163 cagcagggatggaga 149 >gi|6121931|gb|G56612.1|G56612 SHGC-102181 Human Homo sapiens STS genomic, sequence tagged site Length = 489 Score = 30.2 bits (15), Expect = 7.6 Identities = 18/19 (94%) Strand = Plus / Plus Query: 137 tggagactaagtttggccc 155 ||||||||||||| ||||| Sbjct: 302 tggagactaagttgggccc 320 >gi|3599905|gb|G41846|G41846 Z1061 Zebrafish AB Danio rerio STS genomic, sequence tagged site [Danio rerio] Length = 410 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 265 tcactggttcaacta 279 ||||||||||||||| Sbjct: 185 tcactggttcaacta 199 >gi|5224504|gb|G53327.1|G53327 SHGC-82321 Human Homo sapiens STS genomic, sequence tagged site Length = 421 Score = 30.2 bits (15), Expect = 7.6 Identities = 18/19 (94%) Strand = Plus / Plus Query: 90 aaggagcagagaggaaaag 108 |||||| |||||||||||| Sbjct: 209 aaggagaagagaggaaaag 227 >gi|5221389|gb|G50212.1|G50212 SHGC-82917 Human Homo sapiens STS genomic, sequence tagged site Length = 297 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 116 gagagggccaggcag 130 ||||||||||||||| Sbjct: 155 gagagggccaggcag 169 >gi|3168757|gb|G38183|G38183 RPCI-6-164E4Sp6 Human Homo sapiens STS genomic Length = 395 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 42 gcagccagaagcaaa 56 ||||||||||||||| Sbjct: 259 gcagccagaagcaaa 273 >gi|3150191|emb|AL023622|HS863J11T H.sapiens STS from genomic clone 863J11, sequence tagged site [Homo sapiens] Length = 558 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 199 tgtctatttctgtct 213 ||||||||||||||| Sbjct: 155 tgtctatttctgtct 169 >gi|3123402|emb|AL023351|DM171A7S Drosophila melanogaster STS determined from European Mapping Project cosmid, sequence tagged site [Drosophila melanogaster] Length = 600 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 225 acaccaagctccaca 239 ||||||||||||||| Sbjct: 163 acaccaagctccaca 177 >gi|2665031|emb|AL009868|HSPE36B05 H.sapiens flow-sorted chromosome 1 HindIII fragment, SC1pE36B05, sequence tagged site [Homo sapiens] Length = 397 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 199 tgtctatttctgtct 213 ||||||||||||||| Sbjct: 244 tgtctatttctgtct 258 >gi|2641969|dbj|AB004264|AB004264 Mus spretus genomic DNA, RLGS spot, D5Rik122, sequence tagged site [Mus spretus] Length = 237 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 115 ggagagggccaggca 129 ||||||||||||||| Sbjct: 53 ggagagggccaggca 39 >gi|4529138|gb|G48478.1|G48478 SHGC-68947 Human Homo sapiens STS genomic, sequence tagged site Length = 415 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 262 acatcactggttcaa 276 ||||||||||||||| Sbjct: 331 acatcactggttcaa 345 >gi|2484048|gb|G36284|G36284 STS h14a2375 5 Length = 305 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 121 ggccaggcagcaggg 135 ||||||||||||||| Sbjct: 108 ggccaggcagcaggg 122 >gi|1871265|gb|G31295|G31295 sy625c11-R Human (A.Gnirke) Homo sapiens STS genomic, sequence tagged site [Homo sapiens] Length = 279 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 298 tttagtgctccagaa 312 ||||||||||||||| Sbjct: 261 tttagtgctccagaa 275 >gi|1263801|emb|Z70926|DM63D12T D. melanogaster STS determined from European Mapping Project cosmid, sequence tagged site [Drosophila melanogaster] Length = 350 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 316 caggttccttcagat 330 ||||||||||||||| Sbjct: 323 caggttccttcagat 309 >gi|1244248|gb|G19461|G19461 human STS SHGC-11979. Length = 400 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 43 cagccagaagcaaaa 57 ||||||||||||||| Sbjct: 356 cagccagaagcaaaa 342 >gi|1233253|emb|Z51953|HSA084XF1 H.sapiens (D19S932) DNA segment containing (CA) repeat; clone AFMa084xf1; single read, sequence tagged site [Homo sapiens] Length = 276 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 311 aacctcaggttcctt 325 ||||||||||||||| Sbjct: 54 aacctcaggttcctt 40 >gi|1233152|emb|Z51852|HSA070WH1 H.sapiens (D9S1879) DNA segment containing (CA) repeat; clone AFMa070wh1; single read, sequence tagged site [Homo sapiens] Length = 363 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 1 cctccaccctctcat 15 ||||||||||||||| Sbjct: 59 cctccaccctctcat 73 >gi|1215106|gb|G17680|G17680 human STS SHGC-3112 clone pG-956. Length = 313 Score = 30.2 bits (15), Expect = 7.6 Identities = 18/19 (94%) Strand = Plus / Minus Query: 86 ccccaaggagcagagagga 104 |||| |||||||||||||| Sbjct: 213 ccccgaggagcagagagga 195 >gi|1594113|gb|G30562|G30562 human STS SHGC-37420 Length = 447 Score = 30.2 bits (15), Expect = 7.6 Identities = 18/19 (94%) Strand = Plus / Plus Query: 112 ggaggagagggccaggcag 130 ||||||| ||||||||||| Sbjct: 234 ggaggagggggccaggcag 252 >gi|1593022|gb|G29471|G29471 human STS SHGC-33749 Length = 437 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 123 ccaggcagcagggat 137 ||||||||||||||| Sbjct: 320 ccaggcagcagggat 306 >gi|1052040|emb|Z67257|HSA090WF9 H.sapiens DNA segment containing (CA) repeat; clone AFMa090wf9; single read, sequence tagged site [Homo sapiens] Length = 312 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 194 gtaggtgtctatttc 208 ||||||||||||||| Sbjct: 201 gtaggtgtctatttc 215 >gi|881858|gb|G07651|G07651 human STS SHGC-5830 clone pG-2175. Length = 336 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 121 ggccaggcagcaggg 135 ||||||||||||||| Sbjct: 86 ggccaggcagcaggg 100 >gi|1344417|gb|G24091|G24091 human STS WI-12544. Length = 452 Score = 30.2 bits (15), Expect = 7.6 Identities = 18/19 (94%) Strand = Plus / Minus Query: 104 aaaaggcaggaggagaggg 122 |||||||||||| |||||| Sbjct: 234 aaaaggcaggagaagaggg 216 >gi|860391|gb|G07146|G07146 human STS WI-9143. Length = 1946 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 280 tgtcactgctttgtt 294 ||||||||||||||| Sbjct: 492 tgtcactgctttgtt 478 >gi|858959|gb|G05714|G05714 human STS WI-8961. Length = 1337 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 237 acacatgggggcttt 251 ||||||||||||||| Sbjct: 117 acacatgggggcttt 131 >gi|1341506|gb|G21180|G21180 human STS WI-14638. Length = 375 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 288 ctttgttatatttag 302 ||||||||||||||| Sbjct: 74 ctttgttatatttag 60 >gi|1341551|gb|G21225|G21225 human STS WI-11777. Length = 348 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 91 aggagcagagaggaa 105 ||||||||||||||| Sbjct: 216 aggagcagagaggaa 230 >gi|465219|gb|L29850|HUMUT50 Human STS UT50. Length = 382 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Minus Query: 125 aggcagcagggatgg 139 ||||||||||||||| Sbjct: 273 aggcagcagggatgg 259 >gi|860599|gb|G07354|G07354 human STS WI-9600. Length = 226 Score = 30.2 bits (15), Expect = 7.6 Identities = 15/15 (100%) Strand = Plus / Plus Query: 114 aggagagggccaggc 128 ||||||||||||||| Sbjct: 124 aggagagggccaggc 138 Database: data/sts Posted date: Feb 11, 2000 2:37 PM Number of letters in database: 31,998,854 Number of sequences in database: 87,792 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6844 Number of Sequences: 87792 Number of extensions: 6844 Number of successful extensions: 1887 Number of sequences better than 10.0: 51 length of query: 331 length of database: 31,998,854 effective HSP length: 17 effective length of query: 314 effective length of database: 30,506,390 effective search space: 9579006460 effective search space used: 9579006460 T: 0 A: 0 X1: 6 (11.9 bits) X2: 10 (19.8 bits) S1: 12 (24.3 bits) S2: 15 (30.2 bits)