BLASTX 2.2.1 [Jul-12-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8333950|gb|BE038934.1|BE038934 AB07D09 AB Arabidopsis
thaliana cDNA 5' similar to cold-regulated protein cor47, mRNA
sequence
         (738 letters)

Database: cold_tolerance_protein.fasta
           19 sequences; 7312 total letters

Searching..................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|729204|sp|Q06396|CR13_ORYSA 13 KD COLD-INDUCED PROTEIN              21  0.78
gi|729205|sp|Q06397|CR18_ORYSA 18 KD COLD-INDUCED PROTEIN              18  5.1

>gi|729204|sp|Q06396|CR13_ORYSA 13 KD COLD-INDUCED PROTEIN
          Length = 120

 Score = 20.8 bits (42), Expect = 0.78
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 181 CCRHYSF 161
           CC HYSF
Sbjct: 93  CCSHYSF 99


>gi|729205|sp|Q06397|CR18_ORYSA 18 KD COLD-INDUCED PROTEIN
          Length = 156

 Score = 18.1 bits (35), Expect = 5.1
 Identities = 5/7 (71%), Positives = 7/7 (99%)
 Frame = +3

Query: 33 HCLGVLS 53
          HCLG++S
Sbjct: 54 HCLGIVS 60


  Database: cold_tolerance_protein.fasta
    Posted date:  Sep 27, 2001  4:17 PM
  Number of letters in database: 7312
  Number of sequences in database:  19
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3730
Number of Sequences: 19
Number of extensions: 61
Number of successful extensions: 2
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 7312
effective HSP length: 47
effective length of database: 6419
effective search space used:  1270962
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 33 (18.0 bits)