########################################
# Program: needle
# Rundate: Sun 27 Apr 2007 17:20:35
# Commandline: needle
#    [-asequence] Spo0F.faa
#    [-bsequence] paired_r.faa
#    -sformat2 pearson
# Align_format: srspair
# Report_file: ref_rec .needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: ref_rec
# 2: gi|94968718|receiver
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 124
# Identity:      32/124 (25.8%)
# Similarity:    64/124 (51.6%)
# Gaps:          17/124 (13.7%)
# Score: 112.0
# 
#
#=======================================

ref_rec            1 KILIVDD----QYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDL     46
                      :|:.||    :.|.|::|.:  :.|.....:|.:|.||:.:..:..|.:
gi|94968718|r      1 -VLLADDHALVRRGFRLMLED--DPEIEIVAEAGDGAQAVKLAGELHPRV     47

ref_rec           47 VLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALT     96
                     |::|..:|||.|::..|:::....:|.|:::|.:.|...::.:.|.||..
gi|94968718|r     48 VVMDCAMPGMSGMDATKQIRTQWPDIAVLMLTMHSEDTWVRLALEAGANG     97

ref_rec           97 HFAK-PFDIDEIRDAV--------    111
                     :..| ..|:|.|: ||        
gi|94968718|r     98 YILKSAIDLDLIQ-AVRRVANGET    120


#=======================================
#
# Aligned_sequences: 2
# 1: ref_rec
# 2: gi|94968761|receiver
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 119
# Identity:      34/119 (28.6%)
# Similarity:    58/119 (48.7%)
# Gaps:           9/119 ( 7.6%)
# Score: 154.0
# 
#
#=======================================

ref_rec            1 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLD     50
                      ||||||:......|:..|...|::.....|.::||:|...:..||:|.|
gi|94968761|r      1 -ILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSD     49

ref_rec           51 MKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAK    100
                     :.:||.||:.:|:.:|.......|::|:....::|..::..||||....|
gi|94968761|r     50 VVMPGRDGLTLLEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEK     99

ref_rec          101 PFDIDEIRDAV--------    111
                     |...|::...|        
gi|94968761|r    100 PLSTDKLLLTVENALKLKR    118


#=======================================
#
# Aligned_sequences: 2
# 1: ref_rec
# 2: gi|94967506|receiver
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 120
# Identity:      29/120 (24.2%)
# Similarity:    53/120 (44.2%)
# Gaps:           9/120 ( 7.5%)
# Score: 121.0
# 
#
#=======================================

ref_rec            1 -KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLL     49
                      .|::|||..|..:.:..||.:.|:..........|.:.:.....||.::
gi|94967506|r      1 LHIVVVDDDPGTCVYIESVFAELGHTCKSFVRPEAAEEYILTHPVDLAIV     50

ref_rec           50 DMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFA     99
                     |:.:....|:|:|:|.:|....:..:|:|....|:|...|...||:.:..
gi|94967506|r     51 DVYLGSTTGVEVLRRCRVHRPKLYAVIITGQISLEMAARSIAEGAVDYIQ    100

ref_rec          100 KPFDIDEIRDAV--------    111
                     ||.|||.:.:..        
gi|94967506|r    101 KPIDIDALLNIAERALEHKE    120


#=======================================
#
# Aligned_sequences: 2
# 1: ref_rec
# 2: gi|94970045|receiver
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 118
# Identity:      30/118 (25.4%)
# Similarity:    64/118 (54.2%)
# Gaps:           9/118 ( 7.6%)
# Score: 126.0
# 
#
#=======================================

ref_rec            1 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVL     48
                      :|:|:|:..:|....:.....||:...|.:|.:||.:.:|  ||.|:::
gi|94970045|r      1 -VLLVEDEEALRAAAGDFLETRGYKIMTARDGTEALSMASKFAERIDVLI     49

ref_rec           49 LDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHF     98
                     .|:.:||:.|..:.:.:..|....:|:.|:.|.: :.:..:.|:.:.:.|
gi|94970045|r     50 TDLVMPGISGRVLAQELVKIHPETKVMYMSGYDD-ETVMVNGEIDSSSAF     98

ref_rec           99 -AKPFDID----EIRDAV    111
                      .|||.:|    :||:.:
gi|94970045|r     99 LRKPFRMDALSAKIREVL    116


#=======================================
#
# Aligned_sequences: 2
# 1: ref_rec
# 2: gi|94970041|receiver
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 125
# Identity:      35/125 (28.0%)
# Similarity:    70/125 (56.0%)
# Gaps:          18/125 (14.4%)
# Score: 156.5
# 
#
#=======================================

ref_rec            1 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVL     48
                     .:|:|:|:.|:|.|:..:.:::||...:|.:|.:||:||  :.::.|::|
gi|94970041|r      1 TVLLVEDEEGVRKLVRGILSRQGYHVLEATSGEEALEIVRESTQKIDMLL     50

ref_rec           49 LDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHF     98
                     .|:.:.||.|.|:.:|:::...:::||.|:.|.:..:::.    |.||..
gi|94970041|r     51 SDVVLVGMSGRELSERLRIQMPSLKVIYMSGYTDDAIVRH----GVLTES     96

ref_rec           99 A----KPFDIDEIRDAV--------    111
                     |    |||..|.:...|        
gi|94970041|r     97 AEFLQKPFTSDSLLRKVRAVLQKRQ    121


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