######################################## # Program: needle # Rundate: Mon 14 Jul 2008 11:37:15 # Commandline: needle # [-asequence] asis:TATTTTTTGGATTTTTTTCTAGATTTTCTAGGTTATTTAAACCGTTTTTTTTTAATTTAGTGTTTGAGTTTTGACAGGTCTCCACTTTGGGGGCTCCATCGCAAGGAAATTAGAATTCTTATACTTGGTTCTCTTTCCCAGGGACTCCAAGGATCTTTTCATTAGTTTGGATTTTGGTGTTTTCTTTAATTTTGTTAAGAAACAAATCCTTTCTAGAGTTTTTTCTAGCATTATGTTTTTTTTTCTCCTTATCTAAGGGGGTTTGTCGAGGTTTCTTAAATCTTTTTTTCTCTGGGTTTTAAAATTGTTTAAATTTTTTTGACCGAGGGGTTGGGGTGGTTTTCTCATGATAACAGGGGCTGGTGCTTTAGATCCTACCTCTACTGACCCGGGGTCTGCTACTGTGGCTTCTGATGAAGATCCACAGTATGCGCCTACGGAARCTCGGCAGTTTGGTGTTCGAAATCCAGCCCCTCGAATTAATACTCTTGTGCAGGTGGTTGACGAGCGCGGTATCGAATTGCAAAATTTGGGGCGGGACCCCGCTGTTCCGCCTGTTGCTCCGGGGGGGGCAGGTTAATCCTCCAGTCGTCTCCTTTTGGGGGCGTCTTTGACGGGGGTTTAAATCTTTCTTTGGTTGTGGATAGGATTTTTTTTCTAATATCGATCCTACCTGTTTTGGCGGGGCTATTACTTTGTTACTTTTGACCGAAATTTTAATGGAAATTTCTTTGATTCAAATGAATCCCTTAGTTTTCCAACACTTTTTTTTGGTTTTTTTAGGGATAGTCTACGCTGTGGTTAGGTTTGGTTTTATTGGGGGCTTGGTTTGGGCCCACCCCAAATAGGGAGTGGGGGTATGACCTCAGATAGACGAGCTTATTTTAGGGCGGCGACTATAATTATTTCGTTTCCTACAAGGATTAAAGTTTTTTCTTTTACTGTGGGAGGGGGTTTGGTATTAAGAAACGCTAGTCCGGATGTGGCTCTCCATGATACTTATTGTGTAGTAGCTCATTTTCATTATGTTCTTCGAATGGGAGCAGTCATTGGTATTTTTTTGGTTTTTTTTTGAAATTTTTAGGTTATTTAGACCATTTTTTTTTGTTTCGCTAATTAGAATTTTATTAGCCTTTGGTTTTTTTTTATTTTTTGGGGTTAAGACAAGGTGTCGTTGAATTAGTTTAGCAAAATACTGCTTAAGGTAGGCTATAGGATCTACCTTTTATCTTTCTAATCTTTTGTTTTAGTATAATTGGTCTTCGATTCAACAATTTTTAGTCTTCAGTCTTTTTTTTTATTTTGAAAAGGTTTTAACACTCTTGGTTTTGGAGGCTTTGGCTTTCTTCTTACTCTTAGGAGGATGGGCGCTAGAAAGAGTTTTAAGAGGGTGTGAAAGGGGGTTAATAGCAGGATTTGCTTTTTTAACTTATACTGGTTCGTAACGCATTAGCTCAACTCTCTCTTGTAGTTCTAGCAGCCGCCTTTTCTTTGTTGGGGGAGGGTTTAGGAGGAGTCTTTTTTTTCCTAACCCAAGGTGTTTCTTTCTTTTTTTCTTTAAAGTTCTTGACTGTTGGCACTTGTCTCCATAAATTTTCTTTCTTGTAAAGGGCTCCTAAGGCTTCTTGTTTCTGAATTCCTCTTTTCTTTTATTCTGTTTTGAGCTTATTTTTCTTGTTAGCTATTACGTAGGCATAGGGCAAATAATTTTTTTTTCTGCTCTCATTATTCCTTCTCCCTGCTTGTTTCACCCTGTGGGCTCTTTGAGCCCCACTAAGTGAGCGGGGCTCCTGCTTCCGCTCAATTAAATTTTGGTGGGTATTGAGTCTCAGAGGGACTATGATATAGGTTCAGATTGATGGACCTAATCAATCAATTGTATCGCTATACAATCTAGTACCCCTACCAGGGTACCAAGAGAGAGATAACTAGGGTGAATACTACGACTTAGATGTAGTGTTTAAGTTTCTACGGGCTACAGAGAAGCTACCCGCAGGGTAYATATTTGTTCATTACATATTTGTTGACTTTTCTATCTCTGCTTTTACTTTTTTATTTATTTTTAAATCTTTTTAACTTCAGCTGTTTTTCCTTATCTATTTGACGTAGGCATAGGAAAGTTAACGAATTTTGTAATATTTTTAATTATTTTGTATAGTATACAGGGTAGTGGTATGTAATAGGTAAATTCCATAAGTTCATTATAGTTTATCAGTTGAGAGGAATTTAGTATAAGAAGGCCCATTGGGGCTCTTGTCTTATCCAAGAACTGGTAAGATTTAATTCTACCGGGACGGTAGAAATCGGGCAGAGCATGATCTATTTCTTCGGGTATGGCTATAGGGACTAGGTGCTAGGGAGGTATTAGGGCACCGCTCTTTATACAATCTCCATAGATACAACCAGGTCAACTAGGACAACGGAGGACGTTGACAGAGCATAAATAGCGATAGCGTACAAGATAWAATAGGGGCAGTGGTAGCGAAGCGTAGAAGAAAAAATAAGAGTATTGTTTGTAAATAATTCTTTTTTTAGTTTTTAAATATTCTTTTTTTAGGTGGTGTGTGGTTAGGTATGGGGTTAAGGGTGTGGCAAAGAGAAATGTTTATTAAACATTCTTATGGCCGTAGATAGCATATCGATTATACGAGACCTTCGTAAGATCAATCCCCACTAGCATTGCTCATACAGGTTAACTCAATAGGAGGAGCTGGGGTAGAACGTTTCTAGTTCGGGGGTAACCGCAGTTCAATGAAAGTGACGACGTCGGATGGAACAAACTTAATACCACCAGTTGTGCTAACGATTGTTATCTCAATCTATCCCAACAGGCCCCCAGGTAGTGATGAGTGGTGGAATGGTACAGGGTACCAGTGGGTGAAGAGCGTCACGAACCAGGGAATACGGAGTACAGAGTTGAGCGCCCGGGGCTCCGCCCCCGGCTTTTATAGCGCGAGACGTGGTCAGTCGATTCAGCGTTAGGTTTAAACTCCTTTGGCAAAGATTGACTCTAGCGATCCAGAGACCCTGCCTGGCATAAAAGTCTTTATWAACACCAGTAGGTTCAATAAGGTAGTAATCCAATAGAATGGAAAACTCAAGATCTAATCTCTCGAYTTCCTAGTGTCATGGAAATCAGCCAGGTTCTCTTCATCTGCAACAGTAGAAGAAGAAGAGAGACTAGCGAGAGAGTCTTATGGCGGAGACGCTAAGGCTTAAATGTAATGTAGATAACCCCTTACGGAACACTAGAGTGCGACGTAGACTACATAATCCCTCAGGGATATTAGCTCTGCTCGATTAACAATAGCATACTTTGTTACACGGAGTGTATCTAGGGGGAATAATACTAACTTACTTAGCACTATCGCGATGCTACGCATTCGCTCTTTCGCTAAATAAGATACGACGATGAGTGGTTGGTGGAGAGAATAACCGATTCTAACTTGATAATTCGCATGAAATAATTTTTTTATTTTGTTTTTTTTTTGCTCTTAATTTTAGWGGGRGTGTTTATTTTTATTCTAATAAAAAGGATCCGTTGAA # [-bsequence] asis:TTATTAATCTTATGGTTTTGCCGTAAAATTTCTTTCTTTATTTTTTATTGTTAGGATTTTGTTGATTTTATTTTTCTCAAGAATTTTTAGGTCAATTAGACCGGCTTATTTTTTTGTCAGTGTTTAAAGTTTTATTAATTTTTGGGGGGGGGGGGAGACGGGGTGTTATCTGAATTAGTTTTTGGGAGTCTCTAGACATCTCATGGGTTGGCCGGGGGCCTGCCGTCTATAGTTCTTATTCCTTTTAAGGGAGTAAGAATTTCGATTCAGCAACTTTAGTTCACAGTCTTTTTTTTTATTAAGAAAGGTTTTAATATTCTTGTGGTTTTGAACCTTTAGGTTTCTTTCTTTACCTTCGAGGGATTGGGCACTAGAATGAGTTTTAAGAGTGTGTGAAAGGGGGCTTGATAGCAGGGGAATGCTTTTTTAACTTATACTGGCTCGTAACGCATCAGTTCAACTCTCTCTTGCAGTTCTAGCAGCCGCCTTTTTTTTGTTGGGGGGGGGTTAAGAGAGTGTTTTTTTTCTAATCCAAGGGTCTTACTTTCTTTCTTTCTTTAAAAATTCTTTGGCTGTCGACACCTTTCTCTCCCGTCAGTCTCATGGTTTCTGGCTCTCTTGGGCTTTTTTTGTTTGTGAATGCCTCTTTTTTTTATTCTGTTTTGAGCTTATTTTTCTTGTTTACTATTACGTAGGTATAGGGCAAATAATTTTTTTTTCGCGTCTCTTGGCATGCCCATTACTCTAGTTTTATTCCCGGGCTTCTTCTCTCACCCTAGAGGGCTCTTTGAGCCCACACTCAAGTGAGCGGGGCTCCCGCTTCCGCTCAATTAAATTTGGTGGGTATTGAGTCTCAGAGGGACTATGATATAGGTTCAGATTGATGGACCTAGTCAATCAATTGTATCGCTATACAATCTAGTACCCCTACCAGGGTACCAGGAGAGAGATAACTAGGGTGAATACTACGACTTAGATGTACTGTTTAAGTTTCTACGGGCTACAGAGAAGCTACCCGCAGGGTATATATTTGCTCATTACATATTTGTTGATTTTTCTATGTCCGCTTTACTTTTTATATTTTTTTAACTTCAGCTGTTTTTCCTTATCTATTTGACGTAGGCATAGGAAAGTTAACGAATTTTGTAATATTTTTAATTATTTTGTATAGTATACAGGGTAGTGGTATGTAATAGGTAAATTCCATAAGTTCATTATAGTCTATCAGTTGAGAGGAATTTAGTATAAGAAAGCCTGTCAGGGCTCTTGCCTTATCCAAGAACTGGTAAGGATTTCTTGACAGAGGGACTCTGTCAAATCGGGCAGAGCATGATCTATTTCTTCGGGTATGGTTATAAGGCTTAGGTGCTTGGAGGGTATTAGGGCACCGCTCTTAATACAGTCTCCATAGGTGTAACCAGGTCAACTAGGACAACGGAGGACGTTGACAAAGCATGGATAGCGATAGCGTAGAAGATAAAATGGGGCAGTGGTAGCGAAGCGTAGAAGAAAAAATAAGAGTATTGTTTGTAAATAATTCTTTTTTTAGTTTTTAAATATTCTTTTTTTAGGTGGTGTGTGGTTAGGTATGGGGTTAGGGGAGTGGCAAAGAGAAGTGTTTATTAAACATTCTTATGGCCGTAGATAGCATATCGATTATACGAGACCTTCGTAAGATCAATCCCCACTAGCATTGCTCATACAGGTTAACTCAATAGGAGGAGCTGGGGTAGAACGTATCTAGTTCGGGGGTAACCGCAGTTCAATGAAAGTGACGACGTCGGATGGAACAAACTTAATACCACCAGTTGTGCTAACGATTGTTATCTCAATCTATCCCAACAGGCCCCCAGGTAGTGATGAGTGGTGGAATGGTACAGGGTACCAGTGGGTGAAGAGCGTCACGAACCAGGGAATACGGAGTACAGAGTTGAGCGCCCGGGGCTCCGCCCCCGGCTTTTATAGCGCGAGACGTGGTCAGTCGATTCAGCGTTAGGTTTTAAACTCCTTTGGCAAAGATTGATTCTAGCGATCCAGAGACCCTGCCTGGCATAAAAGTCTTTATTAGCACCAGTAGGTTCAATAAGGTAGTAGTCCAATAGAATGGAAAACTCGAGATCTAATCTCTCGATTTCCTAGTGTCATGGAAATCAGCCAGGTTCTCTTCATCTGCAACAGTAGAAGAAGAAGAGAGGCTAGCGAGAGAGTCTTATGGCGGAGACGCTAAGGCTTAAATGTAATGTAGATAACCCCTTACGGAACACTTGAGTGCGACGTAGACTACATAATCCCTCAGGGATATTAGCTCTGCTCGATTAACAATAGCATACTTTGTTACACGGAGTGTATCTGGGGGGAATAATACTAACTTACTTAGCACTATCGCGATGCTACGCATTCGCTCTTTCGCTAAATAAGATACGACGATGAGTGGTTGGTGGAGAGAATAACCGATTCTAACTTGATAATTCGCATGAAATAATTTTTTATTTGTTTTTTTTTTTGCTCTTAATTTTAGAGGATGTTTATTTTTATTCTAATAAAAAGGATCCGTTGAA # -filter # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: asis # 2: asis # Matrix: EDNAFULL # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 3653 # Identity: 2296/3653 (62.9%) # Similarity: 2301/3653 (63.0%) # Gaps: 1202/3653 (32.9%) # Score: 10155.0 # # #======================================= asis 1 TATTTTTTGGATTTTTTTCTAGATTTTCTAGGTTATTTAAACCGTTTTTT 50 asis 0 -------------------------------------------------- 0 asis 51 TTTAATTTAGTGTTTGAGTTTTGACAGGTCTCCACTTTGGGGGCTCCATC 100 asis 0 -------------------------------------------------- 0 asis 101 GCAAGGAAATTAGAATTCTTATACTTGGTTCTCTTTCCCAGGGACTCCAA 150 asis 0 -------------------------------------------------- 0 asis 151 GGATCTTTTCATTAGTTTGGATTTTGGTGTTTTCTTTAATTTTGTTAAGA 200 asis 0 -------------------------------------------------- 0 asis 201 AACAAATCCTTTCTAGAGTTTTTTCTAGCATTATGTTTTTTTTTCTCCTT 250 asis 0 -------------------------------------------------- 0 asis 251 ATCTAAGGGGGTTTGTCGAGGTTTCTTAAATCTTTTTTTCTCTGGGTTTT 300 asis 0 -------------------------------------------------- 0 asis 301 AAAATTGTTTAAATTTTTTTGACCGAGGGGTTGGGGTGGTTTTCTCATGA 350 asis 0 -------------------------------------------------- 0 asis 351 TAACAGGGGCTGGTGCTTTAGATCCTACCTCTACTGACCCGGGGTCTGCT 400 asis 0 -------------------------------------------------- 0 asis 401 ACTGTGGCTTCTGATGAAGATCCACAGTATGCGCCTACGGAARCTCGGCA 450 asis 0 -------------------------------------------------- 0 asis 451 GTTTGGTGTTCGAAATCCAGCCCCTCGAATTAATACTCTTGTGCAGGTGG 500 asis 0 -------------------------------------------------- 0 asis 501 TTGACGAGCGCGGTATCGAATTGCAAAATTTGGGGCGGGACCCCGCTGTT 550 asis 0 -------------------------------------------------- 0 asis 551 CCGCCTGTTGCTCCGGGGGGGGCAGGTTAATCCTCCAGTCGTCTCCTTTT 600 asis 0 -------------------------------------------------- 0 asis 601 GGGGGCGTCTTTGACGGGGGTTTAAATCTTTCTTTGGTTGTGGATAGGAT 650 asis 0 -------------------------------------------------- 0 asis 651 TTTTTTTCTAATATCGATCCTACCTGTTTTGGCGGGGCTATTACTTTGTT 700 asis 0 -------------------------------------------------- 0 asis 701 ACTTTTGACCGAAATTTTAATGGAAATTTCTTTGATTCAAATGAATCCCT 750 asis 0 -------------------------------------------------- 0 asis 751 TAGTTTTCCAACACTTTTTTTTGGTTTTTTTAGGGATAGTCTACGCTGTG 800 asis 0 -------------------------------------------------- 0 asis 801 GTTAGGTTTGGTTTTATTGGGGGCTTGGTTTGGGCCCACCCCAAATAGGG 850 asis 0 -------------------------------------------------- 0 asis 851 AGTGGGGGTATGACCTCAGATAGACGAGCTTATTTTAGGGCGGCGACTAT 900 asis 0 -------------------------------------------------- 0 asis 901 AATTATTTCGTTTCCTACAAGGATTAAAGTTTTTTCTTTTACTGTGGGAG 950 asis 0 -------------------------------------------------- 0 asis 951 GGGGTTTGGTATTAAGAAACGCTAGTCCGGATGTGGCTCTCCATGATACT 1000 .|||||| .|| asis 1 --------TTATTAA--------------------------------TCT 10 asis 1001 TATTGT------GTAGTAGCTCATTTTCATTATGTTCTTCGAATGGGAGC 1044 |||.|| |||..|..|| ||||.||||.||.| ||.| asis 11 TATGGTTTTGCCGTAAAATTTC--TTTCTTTATTTTTT----ATTG---- 50 asis 1045 AGTCATTGGTATTTTTTTGGTTTTTTTTT------GAAATTTTTAGGTTA 1088 ||.|.|||||.|||.||||.|||| | |||||||||||.| asis 51 -----TTAGGATTTTGTTGATTTTATTTTTCTCAAG-AATTTTTAGGTCA 94 asis 1089 TTTAGACC-----ATTTTTTTTT--GTTTCGCTAATTAGAATTTTATTAG 1131 .||||||| ||||||||.| ||.| |||.|.|||||||| asis 95 ATTAGACCGGCTTATTTTTTTGTCAGTGT------TTAAAGTTTTATTA- 137 asis 1132 CCTTTGGTTTTTTTTTATTTTT----TGGGGTTAAGACAAGGTGTCGT-T 1176 |||||| .||||...||||..|||||..| | asis 138 ----------------ATTTTTGGGGGGGGGGGGAGACGGGGTGTTATCT 171 asis 1177 GAATTAGTTTAGCAAAATACTGCTTAAGGTAGGCTATA------------ 1214 |||||||||| || ||.||.||.|| asis 172 GAATTAGTTT-------------TT--GGGAGTCTCTAGACATCTCATGG 206 asis 1215 ---------GGATCTACCTTTTATCTTTCTAAT--CTTTT----GTTTTA 1249 ||..||.||.|.|||..||||.|| ||||| | | asis 207 GTTGGCCGGGGGCCTGCCGTCTATAGTTCTTATTCCTTTTAAGGG----A 252 asis 1250 GT-ATAATTGGTCTTCGATTCAACAATTTTTAGTCTTCAGTCTTTTTTTT 1298 || |.||| |||||||||.||| .||||||...||||||||||||| asis 253 GTAAGAAT-----TTCGATTCAGCAA-CTTTAGTTCACAGTCTTTTTTTT 296 asis 1299 TATTTTGAAAAGGTTTTAACACTCT--TGGTTTTGGAGGCTTTGGCTTTC 1346 ||||..| |||||||||||.|.||| ||||||| ||..||||.|.|||| asis 297 TATTAAG-AAAGGTTTTAATATTCTTGTGGTTTT-GAACCTTTAGGTTTC 344 asis 1347 TT--CTTACTCTTAGGAGGA-TGGGCGCTAGAAAGAGTTTTAAGAGGGTG 1393 || .|||| |||.|..||| |||||.||||||.||||||||||||.||| asis 345 TTTCTTTAC-CTTCGAGGGATTGGGCACTAGAATGAGTTTTAAGAGTGTG 393 asis 1394 TGAAAGGGGG-TTAATAGCAGG---ATTTGCTTTTTTAACTTATACTGGT 1439 |||||||||| ||.|||||||| | |||||||||||||||||||||. asis 394 TGAAAGGGGGCTTGATAGCAGGGGAA--TGCTTTTTTAACTTATACTGGC 441 asis 1440 TCGTAACGCATTAGCTCAACTCTCTCTTGTAGTTCTAGCAGCCGCCTTTT 1489 |||||||||||.||.||||||||||||||.|||||||||||||||||||| asis 442 TCGTAACGCATCAGTTCAACTCTCTCTTGCAGTTCTAGCAGCCGCCTTTT 491 asis 1490 CTTTGTTGGGGGAGGGTTTAGGAGGAGTCTTTTTTTTCCTAACCCAA-GG 1538 .|||||||||||.|||||.|| .||||.|||||||| ||||.|||| || asis 492 TTTTGTTGGGGGGGGGTTAAG--AGAGTGTTTTTTTT-CTAATCCAAGGG 538 asis 1539 TGTTTCTTTCTTTTTTTCTTT-AAAGTTC-TTGACTGTTGGCAC--TTGT 1584 |.||.||||||||.||||||| |||.||| |||.||||.|.||| ||.| asis 539 TCTTACTTTCTTTCTTTCTTTAAAAATTCTTTGGCTGTCGACACCTTTCT 588 asis 1585 CTCCATAAATTTTC----TTTCTTGTAAAGGGCTC-CTAAGGC--TTCTT 1627 ||||....|.|.|| ||||| ||||| ||..||| ||.|| asis 589 CTCCCGTCAGTCTCATGGTTTCT-------GGCTCTCTTGGGCTTTTTTT 631 asis 1628 GTTTCTGAATTCCTCTTTTCTTTTATTCTGTTTTGAGCTTATTTTTCTTG 1677 ||||.|||||.|||||||| |||||||||||||||||||||||||||||| asis 632 GTTTGTGAATGCCTCTTTT-TTTTATTCTGTTTTGAGCTTATTTTTCTTG 680 asis 1678 TTAGCTATTACGTAGGCATAGGGCAAATAATTTTTTTTTCTG---CTCT- 1723 ||..||||||||||||.||||||||||||||||||||||| | |||| asis 681 TTTACTATTACGTAGGTATAGGGCAAATAATTTTTTTTTC-GCGTCTCTT 729 asis 1724 --------CATTA-------TTCCTTCTCC---CTGCTTGTTTCACCCT- 1754 ||||| ||..||| || ||.|||.|.||||||| asis 730 GGCATGCCCATTACTCTAGTTTTATTC-CCGGGCTTCTTCTCTCACCCTA 778 asis 1755 GTGGGCTCTTTGAGCCC-CACT-AAGTGAGCGGGGCTCCTGCTTCCGCTC 1802 |.||||||||||||||| |||| ||||||||||||||||.|||||||||| asis 779 GAGGGCTCTTTGAGCCCACACTCAAGTGAGCGGGGCTCCCGCTTCCGCTC 828 asis 1803 AATTAAATTTTGGTGGGTATTGAGTCTCAGAGGGACTATGATATAGGTTC 1852 ||||||| |||||||||||||||||||||||||||||||||||||||||| asis 829 AATTAAA-TTTGGTGGGTATTGAGTCTCAGAGGGACTATGATATAGGTTC 877 asis 1853 AGATTGATGGACCTAATCAATCAATTGTATCGCTATACAATCTAGTACCC 1902 |||||||||||||||.|||||||||||||||||||||||||||||||||| asis 878 AGATTGATGGACCTAGTCAATCAATTGTATCGCTATACAATCTAGTACCC 927 asis 1903 CTACCAGGGTACCAAGAGAGAGATAACTAGGGTGAATACTACGACTTAGA 1952 ||||||||||||||.||||||||||||||||||||||||||||||||||| asis 928 CTACCAGGGTACCAGGAGAGAGATAACTAGGGTGAATACTACGACTTAGA 977 asis 1953 TGTAGTGTTTAAGTTTCTACGGGCTACAGAGAAGCTACCCGCAGGGTAYA 2002 ||||.|||||||||||||||||||||||||||||||||||||||||||.| asis 978 TGTACTGTTTAAGTTTCTACGGGCTACAGAGAAGCTACCCGCAGGGTATA 1027 asis 2003 TATTTGTTCATTACATATTTGTTGACTTTTCTATCTCTGCTTTTACTTTT 2052 ||||||.||||||||||||||||||.||||||||.||.|| ||||||||| asis 1028 TATTTGCTCATTACATATTTGTTGATTTTTCTATGTCCGC-TTTACTTTT 1076 asis 2053 T-TATTTATTTTTAAATCTTTTTAACTTCAGCTGTTTTTCCTTATCTATT 2101 | |||| |||||||||||||||||||||||||||||||| asis 1077 TATATT------------TTTTTAACTTCAGCTGTTTTTCCTTATCTATT 1114 asis 2102 TGACGTAGGCATAGGAAAGTTAACGAATTTTGTAATATTTTTAATTATTT 2151 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 1115 TGACGTAGGCATAGGAAAGTTAACGAATTTTGTAATATTTTTAATTATTT 1164 asis 2152 TGTATAGTATACAGGGTAGTGGTATGTAATAGGTAAATTCCATAAGTTCA 2201 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 1165 TGTATAGTATACAGGGTAGTGGTATGTAATAGGTAAATTCCATAAGTTCA 1214 asis 2202 TTATAGTTTATCAGTTGAGAGGAATTTAGTATAAGAAGGCCCATTGGGGC 2251 |||||||.|||||||||||||||||||||||||||||.|||..|..|||| asis 1215 TTATAGTCTATCAGTTGAGAGGAATTTAGTATAAGAAAGCCTGTCAGGGC 1264 asis 2252 TCTTGTCTTATCCAAGAACTGGTAA-GATTTAATTCT----ACCGGGA-- 2294 |||||.||||||||||||||||||| ||| |||| |..|||| asis 1265 TCTTGCCTTATCCAAGAACTGGTAAGGAT----TTCTTGACAGAGGGACT 1310 asis 2295 CGGTAGAAATCGGGCAGAGCATGATCTATTTCTTCGGGTATGGCTATAGG 2344 |.|| .|||||||||||||||||||||||||||||||||||||.||||.| asis 1311 CTGT-CAAATCGGGCAGAGCATGATCTATTTCTTCGGGTATGGTTATAAG 1359 asis 2345 GACTAGGTGCTAGGGAGGTATTAGGGCACCGCTCTTTATACAATCTCCAT 2394 |..||||||||.||..||||||||||||||||||||.|||||.||||||| asis 1360 GCTTAGGTGCTTGGAGGGTATTAGGGCACCGCTCTTAATACAGTCTCCAT 1409 asis 2395 AGATACAACCAGGTCAACTAGGACAACGGAGGACGTTGACAGAGCATAAA 2444 ||.|..|||||||||||||||||||||||||||||||||||.|||||..| asis 1410 AGGTGTAACCAGGTCAACTAGGACAACGGAGGACGTTGACAAAGCATGGA 1459 asis 2445 TAGCGATAGCGTACAAGATAWAATAGGGGCAGTGGTAGCGAAGCGTAGAA 2494 |||||||||||||.||||||.||| ||||||||||||||||||||||||| asis 1460 TAGCGATAGCGTAGAAGATAAAAT-GGGGCAGTGGTAGCGAAGCGTAGAA 1508 asis 2495 GAAAAAATAAGAGTATTGTTTGTAAATAATTCTTTTTTTAGTTTTTAAAT 2544 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 1509 GAAAAAATAAGAGTATTGTTTGTAAATAATTCTTTTTTTAGTTTTTAAAT 1558 asis 2545 ATTCTTTTTTTAGGTGGTGTGTGGTTAGGTATGGGGTTAAGGGTGTGGCA 2594 |||||||||||||||||||||||||||||||||||||||.|||.|||||| asis 1559 ATTCTTTTTTTAGGTGGTGTGTGGTTAGGTATGGGGTTAGGGGAGTGGCA 1608 asis 2595 AAGAGAAATGTTTATTAAACATTCTTATGGCCGTAGATAGCATATCGATT 2644 |||||||.|||||||||||||||||||||||||||||||||||||||||| asis 1609 AAGAGAAGTGTTTATTAAACATTCTTATGGCCGTAGATAGCATATCGATT 1658 asis 2645 ATACGAGACCTTCGTAAGATCAATCCCCACTAGCATTGCTCATACAGGTT 2694 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 1659 ATACGAGACCTTCGTAAGATCAATCCCCACTAGCATTGCTCATACAGGTT 1708 asis 2695 AACTCAATAGGAGGAGCTGGGGTAGAACGTTTCTAGTTCGGGGGTAACCG 2744 ||||||||||||||||||||||||||||||.||||||||||||||||||| asis 1709 AACTCAATAGGAGGAGCTGGGGTAGAACGTATCTAGTTCGGGGGTAACCG 1758 asis 2745 CAGTTCAATGAAAGTGACGACGTCGGATGGAACAAACTTAATACCACCAG 2794 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 1759 CAGTTCAATGAAAGTGACGACGTCGGATGGAACAAACTTAATACCACCAG 1808 asis 2795 TTGTGCTAACGATTGTTATCTCAATCTATCCCAACAGGCCCCCAGGTAGT 2844 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 1809 TTGTGCTAACGATTGTTATCTCAATCTATCCCAACAGGCCCCCAGGTAGT 1858 asis 2845 GATGAGTGGTGGAATGGTACAGGGTACCAGTGGGTGAAGAGCGTCACGAA 2894 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 1859 GATGAGTGGTGGAATGGTACAGGGTACCAGTGGGTGAAGAGCGTCACGAA 1908 asis 2895 CCAGGGAATACGGAGTACAGAGTTGAGCGCCCGGGGCTCCGCCCCCGGCT 2944 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 1909 CCAGGGAATACGGAGTACAGAGTTGAGCGCCCGGGGCTCCGCCCCCGGCT 1958 asis 2945 TTTATAGCGCGAGACGTGGTCAGTCGATTCAGCGTTAGG-TTTAAACTCC 2993 ||||||||||||||||||||||||||||||||||||||| |||||||||| asis 1959 TTTATAGCGCGAGACGTGGTCAGTCGATTCAGCGTTAGGTTTTAAACTCC 2008 asis 2994 TTTGGCAAAGATTGACTCTAGCGATCCAGAGACCCTGCCTGGCATAAAAG 3043 |||||||||||||||.|||||||||||||||||||||||||||||||||| asis 2009 TTTGGCAAAGATTGATTCTAGCGATCCAGAGACCCTGCCTGGCATAAAAG 2058 asis 3044 TCTTTATWAACACCAGTAGGTTCAATAAGGTAGTAATCCAATAGAATGGA 3093 |||||||.|.|||||||||||||||||||||||||.|||||||||||||| asis 2059 TCTTTATTAGCACCAGTAGGTTCAATAAGGTAGTAGTCCAATAGAATGGA 2108 asis 3094 AAACTCAAGATCTAATCTCTCGAYTTCCTAGTGTCATGGAAATCAGCCAG 3143 ||||||.||||||||||||||||.|||||||||||||||||||||||||| asis 2109 AAACTCGAGATCTAATCTCTCGATTTCCTAGTGTCATGGAAATCAGCCAG 2158 asis 3144 GTTCTCTTCATCTGCAACAGTAGAAGAAGAAGAGAGACTAGCGAGAGAGT 3193 ||||||||||||||||||||||||||||||||||||.||||||||||||| asis 2159 GTTCTCTTCATCTGCAACAGTAGAAGAAGAAGAGAGGCTAGCGAGAGAGT 2208 asis 3194 CTTATGGCGGAGACGCTAAGGCTTAAATGTAATGTAGATAACCCCTTACG 3243 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 2209 CTTATGGCGGAGACGCTAAGGCTTAAATGTAATGTAGATAACCCCTTACG 2258 asis 3244 GAACACTAGAGTGCGACGTAGACTACATAATCCCTCAGGGATATTAGCTC 3293 |||||||.|||||||||||||||||||||||||||||||||||||||||| asis 2259 GAACACTTGAGTGCGACGTAGACTACATAATCCCTCAGGGATATTAGCTC 2308 asis 3294 TGCTCGATTAACAATAGCATACTTTGTTACACGGAGTGTATCTAGGGGGA 3343 |||||||||||||||||||||||||||||||||||||||||||.|||||| asis 2309 TGCTCGATTAACAATAGCATACTTTGTTACACGGAGTGTATCTGGGGGGA 2358 asis 3344 ATAATACTAACTTACTTAGCACTATCGCGATGCTACGCATTCGCTCTTTC 3393 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 2359 ATAATACTAACTTACTTAGCACTATCGCGATGCTACGCATTCGCTCTTTC 2408 asis 3394 GCTAAATAAGATACGACGATGAGTGGTTGGTGGAGAGAATAACCGATTCT 3443 |||||||||||||||||||||||||||||||||||||||||||||||||| asis 2409 GCTAAATAAGATACGACGATGAGTGGTTGGTGGAGAGAATAACCGATTCT 2458 asis 3444 AACTTGATAATTCGCATGAAATAATTTTTTTATTTTGTTTTTTTTTTGCT 3493 |||||||||||||||||||||||| ||||||||||..||||||||||||| asis 2459 AACTTGATAATTCGCATGAAATAA-TTTTTTATTTGTTTTTTTTTTTGCT 2507 asis 3494 CTTAATTTTAGWGGGRGTGTTTATTTTTATTCTAATAAAAAGGATCCGTT 3543 |||||||||||.|| .||||||||||||||||||||||||||||||||| asis 2508 CTTAATTTTAGAGG--ATGTTTATTTTTATTCTAATAAAAAGGATCCGTT 2555 asis 3544 GAA 3546 ||| asis 2556 GAA 2558 #--------------------------------------- #---------------------------------------