# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: h00.hmm # target sequence database: /home/bow/db/hmmer/uniprot_sprot.fasta # output directed to file: hmmer_cases/text_hmmsearch_h00.out # per-seq hits tabular output: hmmer_cases/tab_hmmsearch_h00.out # per-dom hits tabular output: hmmer_cases/domtab_hmmsearch_h00.out # sequence reporting threshold: score >= 480 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: globins4 [M=149] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (149 nodes) Target sequences: 535698 (190107059 residues) Passed MSV filter: 20698 (0.0386374); expected 10714.0 (0.02) Passed bias filter: 16985 (0.0317063); expected 10714.0 (0.02) Passed Vit filter: 2311 (0.004314); expected 535.7 (0.001) Passed Fwd filter: 1104 (0.00206086); expected 5.4 (1e-05) Initial search space (Z): 535698 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 14.31u 0.13s 00:00:14.44 Elapsed: 00:00:03.95 # Mc/sec: 7171.13 //