# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b1 (May 2013); http://hmmer.org/ # Copyright (C) 2013 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: prot_multi.hmm # target sequence database: /home/bow/db/hmmer/protdb/uniprot_sprot.fasta # output directed to file: hmmsearch/text_31b1_hmmsearch_001.out # per-seq hits tabular output: hmmsearch/tab_31b1_hmmsearch_001.out # per-dom hits tabular output: hmmsearch/domtab_31b1_hmmsearch_001.out # pfam-style tabular hit output: hmmsearch/pfamtab_31b1_hmmsearch_001.out # sequence reporting threshold: score >= 485 # number of worker threads: 2 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Globins [M=149] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (149 nodes) Target sequences: 544996 (193815432 residues searched) Passed MSV filter: 20983 (0.0385012); expected 10899.9 (0.02) Passed bias filter: 17218 (0.0315929); expected 10899.9 (0.02) Passed Vit filter: 2333 (0.00428077); expected 545.0 (0.001) Passed Fwd filter: 1115 (0.00204589); expected 5.4 (1e-05) Initial search space (Z): 544996 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 7.54u 0.11s 00:00:07.65 Elapsed: 00:00:03.03 # Mc/sec: 9530.86 // Query: Pkinase [M=260] Accession: PF00069.17 Description: Protein kinase domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-147 492.3 0.0 1.2e-72 249.3 0.0 2.1 2 sp|Q9WUT3|KS6A2_MOUSE Ribosomal protein S6 kinase alpha-2 OS 2.7e-146 490.7 0.0 8.8e-73 249.7 0.0 2.1 2 sp|Q63531|KS6A1_RAT Ribosomal protein S6 kinase alpha-1 OS 2.2e-145 487.7 0.0 4.7e-72 247.4 0.0 2.1 2 sp|Q15418|KS6A1_HUMAN Ribosomal protein S6 kinase alpha-1 OS 2.6e-145 487.5 0.0 7.6e-72 246.7 0.0 2.1 2 sp|P18652|KS6AA_CHICK Ribosomal protein S6 kinase 2 alpha OS Domain annotation for each sequence (and alignments): >> sp|Q9WUT3|KS6A2_MOUSE Ribosomal protein S6 kinase alpha-2 OS=Mus musculus GN=Rps6ka2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 241.2 0.0 2.6e-75 3.6e-70 1 260 [] 59 318 .. 59 318 .. 0.95 2 ! 249.3 0.0 8.6e-78 1.2e-72 1 260 [] 415 672 .. 415 672 .. 0.97 Alignments for each domain: == domain 1 score: 241.2 bits; conditional E-value: 2.6e-75 EEEEEEEEEETTEEEEEEEE...TTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHSSSSB--EEEEEEETTEEEEEEE--TS-BH CS Pkinase 1 yelleklGsGsfGkVykakk...kktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfetkdelylvleyveggdl 85 +ell+ lG+Gs+GkV+ ++k ++ g+ +A+K+lkk + k + + +++ E il++++Hp+ivkl+ +f+t+ +lyl+l++++ggdl sp|Q9WUT3|KS6A2_MOUSE 59 FELLKVLGQGSYGKVFLVRKvtgSDAGQLYAMKVLKKATLKVRDRVRSKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDL 146 67899**********7666611155667*****************99999************************************** PP HHHHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEEEE--GTT.E..EECSS-C-S--S-GGGS-HHHHCCS CS Pkinase 86 fdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgevkiaDFGlakkleksseklttlvgtreYmAPEvllka 173 f+ l+ke ++ee++k+++ +++ +l++lH gii+rDLKpeNiLld++g++ki+DFGl+k+++ +++++++++gt eYmAPEv++ + sp|Q9WUT3|KS6A2_MOUSE 147 FTRLSKEVMFTEEDVKFYLAELALALDHLHGLGIIYRDLKPENILLDEEGHIKITDFGLSKEATDHDKRAYSFCGTIEYMAPEVVN-R 233 **************************************************************************************.* PP -CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTT.....HHHHHT CS Pkinase 174 keytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt.....aeeilk 256 +++t+++D+Ws+Gv+++e+ltg+lpf+g+ d++e+++ ilk kl ++ s +e+++l++ l++++p +Rl +eei++ sp|Q9WUT3|KS6A2_MOUSE 234 RGHTQSADWWSFGVLMFEMLTGSLPFQGK---DRKETMALILKAKLGMPQFLS----AEAQSLLRALFKRNPCNRLGagvdgVEEIKR 314 *****************************...999999999999999998866....99******************9999999**** PP SGGG CS Pkinase 257 hpwl 260 hp++ sp|Q9WUT3|KS6A2_MOUSE 315 HPFF 318 *997 PP == domain 2 score: 249.3 bits; conditional E-value: 8.6e-78 EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHH.SSSSB--EEEEEEETTEEEEEEE--TS-BHHH CS Pkinase 1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfetkdelylvleyveggdlfd 87 ye++e +G Gs+++++++++k t ++AvKi++k++++ ++ E++il + +Hpni++l +v+ + +++ylv+e+++gg+l d sp|Q9WUT3|KS6A2_MOUSE 415 YEIKEDIGVGSYSVCKRCVHKATDAEYAVKIIDKSKRDPSE------EIEILLRYgQHPNIITLKDVYDDGKYVYLVMELMRGGELLD 496 7899***********************************98......9*******99******************************* PP HHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEE....EE--GTT.E..EECSS-C-S--S-GGGS-HHHHC CS Pkinase 88 llkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgev....kiaDFGlakkleksseklttlvgtreYmAPEvll 171 + +++++se+e+ +++++i++ ++ylHs+g++HrDLKp+NiL +++ +i+DFG+ak+l +++ l t + t +++APEvl+ sp|Q9WUT3|KS6A2_MOUSE 497 RILRQRCFSEREASDVLYTIARTMDYLHSQGVVHRDLKPSNILYMDESGNpesiRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLK 584 *******************************************98544444888********************************** PP CS-CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTTHHHHHTSGG CS Pkinase 172 kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpw 259 +++y++++DvWslG++ly++l g +pf + +++ +e++++i ++k+ + +++s s+ +kd+++k+l+ dp++Rlta ++lkhpw sp|Q9WUT3|KS6A2_MOUSE 585 -RQGYDAACDVWSLGILLYTMLAGFTPFANGPDDTPEEILARIGSGKYALSGGNWDSISDAAKDVVSKMLHVDPQQRLTAVQVLKHPW 671 .*************************************************************************************** PP G CS Pkinase 260 l 260 + sp|Q9WUT3|KS6A2_MOUSE 672 I 672 7 PP >> sp|Q63531|KS6A1_RAT Ribosomal protein S6 kinase alpha-1 OS=Rattus norvegicus GN=Rps6ka1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 239.2 0.0 1.1e-74 1.4e-69 1 258 [. 62 319 .. 62 321 .. 0.94 2 ! 249.7 0.0 6.5e-78 8.8e-73 2 260 .] 419 675 .. 418 675 .. 0.97 Alignments for each domain: == domain 1 score: 239.2 bits; conditional E-value: 1.1e-74 EEEEEEEEEETTEEE...EEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHSSSSB--EEEEEEETTEEEEEEE--TS-BHHH CS Pkinase 1 yelleklGsGsfGkV...ykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfetkdelylvleyveggdlfd 87 +ell+ lG+GsfGkV k+++ ++g+ +A+K+lkk + k + + +++ E il+ ++Hp++vkl+ +f+t+ +lyl+l++++ggdlf+ sp|Q63531|KS6A1_RAT 62 FELLKVLGQGSFGKVflvRKVTRPDNGHLYAMKVLKKATLKVRDRVRTKMERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFT 151 67899**********4444555666777****************999999**************************************** PP HHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEEEE--GTT.E..EECSS-C-S--S-GGGS-HHHHCCS-CTH CS Pkinase 88 llkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgevkiaDFGlakkleksseklttlvgtreYmAPEvllkakeyt 177 l+ke ++ee++k+++ +++ gl++lHs gii+rDLKpeNiLld++g++k++DFGl+k++ +++k+++++gt eYmAPEv++ ++++t sp|Q63531|KS6A1_RAT 152 RLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVN-RQGHT 240 ************************************************************************************.***** PP HHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTT.....HHHHHTSG CS Pkinase 178 kkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt.....aeeilkhp 258 +++D+Ws+Gv+++e+ltg+lpf+g+ d++e++ ilk kl ++ s +e+++l++ l++++pa+Rl aeei++h sp|Q63531|KS6A1_RAT 241 HSADWWSYGVLMFEMLTGSLPFQGK---DRKETMTLILKAKLGMPQFLS----TEAQSLLRALFKRNPANRLGsgpdgAEEIKRHI 319 *************************...999999999999999998866....89*****************98888888888885 PP == domain 2 score: 249.7 bits; conditional E-value: 6.5e-78 EEEEEEEEETTEEEEEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHH.SSSSB--EEEEEEETTEEEEEEE--TS-BHHHHHH CS Pkinase 2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfetkdelylvleyveggdlfdllk 90 ++e++G Gs+++++++++k t+ ++AvK+++k++++ ++ E++il + +Hpni++l +v+ +++++ylv+e+++gg+l d + sp|Q63531|KS6A1_RAT 419 IVKETIGVGSYSVCKRCVHKATNMEYAVKVIDKSKRDPSE------EIEILLRYgQHPNIITLKDVYDDSKHVYLVTELMRGGELLDKIL 502 6789**********************************98......9*******99********************************** PP HHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEE....EE--GTT.E..EECSS-C-S--S-GGGS-HHHHCCS-CT CS Pkinase 91 kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgev....kiaDFGlakkleksseklttlvgtreYmAPEvllkakey 176 +++ +se+e+ +++++i + +eylHs+g++HrDLKp+NiL +++ +i+DFG+ak+l +++ l t + t +++APEvl+ +++y sp|Q63531|KS6A1_RAT 503 RQKFFSEREASFVLYTISKTVEYLHSQGVVHRDLKPSNILYVDESGNpeclRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLK-RQGY 591 9***************************************98554445999**********************************.**** PP HHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTTHHHHHTSGGG CS Pkinase 177 tkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260 ++ +D+WslGv+ly++l g +pf + +++ +e++ +i+++k + ++++ se++kdl++k+l+ dp++Rlta+++l+hpw+ sp|Q63531|KS6A1_RAT 592 DEGCDIWSLGVLLYTMLAGYTPFANGPSDTPEEILTRISSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWI 675 ***********************************************************************************7 PP >> sp|Q15418|KS6A1_HUMAN Ribosomal protein S6 kinase alpha-1 OS=Homo sapiens GN=RPS6KA1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 238.6 0.0 1.6e-74 2.2e-69 1 258 [. 62 319 .. 62 321 .. 0.94 2 ! 247.4 0.0 3.4e-77 4.7e-72 1 260 [] 418 675 .. 418 675 .. 0.97 Alignments for each domain: == domain 1 score: 238.6 bits; conditional E-value: 1.6e-74 EEEEEEEEEETTEEE...EEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHSSSSB--EEEEEEETTEEEEEEE--TS-BH CS Pkinase 1 yelleklGsGsfGkV...ykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfetkdelylvleyveggdl 85 +ell+ lG+GsfGkV k+++ ++g+ +A+K+lkk + k + + +++ E il+ ++Hp++vkl+ +f+t+ +lyl+l++++ggdl sp|Q15418|KS6A1_HUMAN 62 FELLKVLGQGSFGKVflvRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDL 149 67899**********4444555566667****************999999************************************** PP HHHHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEEEE--GTT.E..EECSS-C-S--S-GGGS-HHHHCCS CS Pkinase 86 fdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgevkiaDFGlakkleksseklttlvgtreYmAPEvllka 173 f+ l+ke ++ee++k+++ +++ gl++lHs gii+rDLKpeNiLld++g++k++DFGl+k++ +++k+++++gt eYmAPEv++ + sp|Q15418|KS6A1_HUMAN 150 FTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVN-R 236 **************************************************************************************.* PP -CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTT.....HHHHHT CS Pkinase 174 keytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt.....aeeilk 256 +++++++D+Ws+Gv+++e+ltg+lpf+g+ d++e++ ilk kl ++ s +e+++l++ l++++pa+Rl aeei++ sp|Q15418|KS6A1_HUMAN 237 QGHSHSADWWSYGVLMFEMLTGSLPFQGK---DRKETMTLILKAKLGMPQFLS----TEAQSLLRALFKRNPANRLGsgpdgAEEIKR 317 *****************************...999999999999999998866....89*****************988888899888 PP SG CS Pkinase 257 hp 258 h sp|Q15418|KS6A1_HUMAN 318 HV 319 85 PP == domain 2 score: 247.4 bits; conditional E-value: 3.4e-77 EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHH.SSSSB--EEEEEEETTEEEEEEE--TS-BHHH CS Pkinase 1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfetkdelylvleyveggdlfd 87 y ++e++G Gs+++++++++k t+ ++AvK+++k++++ ++ E++il + +Hpni++l +v+ + +++ylv+e+++gg+l d sp|Q15418|KS6A1_HUMAN 418 YVVKETIGVGSYSECKRCVHKATNMEYAVKVIDKSKRDPSE------EIEILLRYgQHPNIITLKDVYDDGKHVYLVTELMRGGELLD 499 67899**********************************98......9*******99******************************* PP HHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEE....EE--GTT.E..EECSS-C-S--S-GGGS-HHHHC CS Pkinase 88 llkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgev....kiaDFGlakkleksseklttlvgtreYmAPEvll 171 + +++ +se+e+ +++ +i + +eylHs+g++HrDLKp+NiL +++ +i+DFG+ak+l +++ l t + t +++APEvl+ sp|Q15418|KS6A1_HUMAN 500 KILRQKFFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNILYVDESGNpeclRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLK 587 ***9***************************************98554445999********************************** PP CS-CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTTHHHHHTSGG CS Pkinase 172 kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpw 259 +++y++ +D+WslG++ly++l g +pf + +++ +e++ +i ++k + ++++ se++kdl++k+l+ dp++Rlta+++l+hpw sp|Q15418|KS6A1_HUMAN 588 -RQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPW 674 .*************************************************************************************** PP G CS Pkinase 260 l 260 + sp|Q15418|KS6A1_HUMAN 675 V 675 6 PP >> sp|P18652|KS6AA_CHICK Ribosomal protein S6 kinase 2 alpha OS=Gallus gallus GN=RPS6KA PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 239.0 0.0 1.2e-74 1.6e-69 1 259 [. 80 338 .. 80 339 .. 0.95 2 ! 246.7 0.0 5.6e-77 7.6e-72 1 260 [] 435 692 .. 435 692 .. 0.97 Alignments for each domain: == domain 1 score: 239.0 bits; conditional E-value: 1.2e-74 EEEEEEEEEETTEEEEEEEET...TTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHSSSSB--EEEEEEETTEEEEEEE--TS-BH CS Pkinase 1 yelleklGsGsfGkVykakkk...ktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfetkdelylvleyveggdl 85 +ell+ lG+GsfGkV+ ++k ++++ +A+K+lkk + k + + +++ E il+ ++Hp++vkl+ +f+t+ +lyl+l++++ggdl sp|P18652|KS6AA_CHICK 80 FELLKVLGQGSFGKVFLVRKItppDSNHLYAMKVLKKATLKVRDRVRTKIERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDL 167 67899**********7777661115677**************99999888************************************** PP HHHHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEEEE--GTT.E..EECSS-C-S--S-GGGS-HHHHCCS CS Pkinase 86 fdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgevkiaDFGlakkleksseklttlvgtreYmAPEvllka 173 f+ l+ke ++ee++k+++ +++ gl++lHs gii+rDLKpeNiLld++g++k++DFGl+k++ +++k+++++gt eYmAPEv++ + sp|P18652|KS6AA_CHICK 168 FTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVN-R 254 **************************************************************************************.* PP -CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTT.....HHHHHT CS Pkinase 174 keytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt.....aeeilk 256 +++++++D+Ws+Gv+++e+ltg+lpf+g+ d++e++ ilk kl ++ s +e+++l++ l++++pa+Rl aeei++ sp|P18652|KS6AA_CHICK 255 QGHSHSADWWSYGVLMFEMLTGSLPFQGK---DRKETMTLILKAKLGMPQFLS----AEAQSLLRALFKRNPANRLGsgpdgAEEIKR 335 *****************************...999999999999999998866....99*****************999999****** PP SGG CS Pkinase 257 hpw 259 hp+ sp|P18652|KS6AA_CHICK 336 HPF 338 *98 PP == domain 2 score: 246.7 bits; conditional E-value: 5.6e-77 EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHH.SSSSB--EEEEEEETTEEEEEEE--TS-BHHH CS Pkinase 1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfetkdelylvleyveggdlfd 87 y ++e +G Gs+++++++++k+t+ ++AvK+++k++++ ++ E++il + +Hpni++l +v+ + +++ylv+e+++gg+l d sp|P18652|KS6AA_CHICK 435 YVVKEAIGVGSYSVCKRCIHKTTNMEYAVKVIDKSKRDPSE------EIEILLRYgQHPNIITLKDVYDDGKYVYLVTELMRGGELLD 516 568899*********************************98......9*******99******************************* PP HHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEE....EE--GTT.E..EECSS-C-S--S-GGGS-HHHHC CS Pkinase 88 llkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgev....kiaDFGlakkleksseklttlvgtreYmAPEvll 171 + +++ +se+e+ +++ +i++ +eylHs+g++HrDLKp+NiL +++ +i+DFG+ak+l +++ l t + t +++APEvl+ sp|P18652|KS6AA_CHICK 517 KILRQKFFSEREASSVLHTICKTVEYLHSQGVVHRDLKPSNILYVDESGNpesiRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLK 604 ***9***************************************98554444888********************************** PP CS-CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTTHHHHHTSGG CS Pkinase 172 kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpw 259 +++y++ +D+WslGv+ly++l g++pf + +++ +e++ +i ++k + + ++++ s+ +kdl++k+l+ dp++Rlta+++l+hpw sp|P18652|KS6AA_CHICK 605 -RQGYDEGCDIWSLGVLLYTMLAGCTPFANGPSDTPEEILTRIGGGKFSVNGGNWDTISDVAKDLVSKMLHVDPHQRLTAKQVLQHPW 691 .*************************************************************************************** PP G CS Pkinase 260 l 260 + sp|P18652|KS6AA_CHICK 692 I 692 7 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (260 nodes) Target sequences: 544996 (193815432 residues searched) Passed MSV filter: 21465 (0.0393856); expected 10899.9 (0.02) Passed bias filter: 16124 (0.0295855); expected 10899.9 (0.02) Passed Vit filter: 5070 (0.00930282); expected 545.0 (0.001) Passed Fwd filter: 4036 (0.00740556); expected 5.4 (1e-05) Initial search space (Z): 544996 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 22.47u 0.13s 00:00:22.60 Elapsed: 00:00:10.11 # Mc/sec: 4984.37 // [ok]