# ----------------  Reverse/Complement - blrevcomp (May 23, 2009) ---------------------
item:blrevcomp - reverse and complement
itemmethod: blrevcomp $STRAND in1 in1.blrevcomp; $GDEOUTPUT
itemhelp:doc/bioLegato/blrevcomp.html
itemopen:gde_help_viewer.csh

in:in1
informat:flat

arg:STRAND
arglabel:Strand
argtype:chooser
argchoice:reverse complement:-r
argchoice:complement only:-c
argchoice:flip (reverse only):-f
argvalue:0


arg:GDEOUTPUT
arglabel:Output to new GDE window?
argtype:chooser
# Problem with Linux-Intel version of GDE (doesn't affect Solaris):
# If we declare an 'out' file, then it must always exist,
# even if we don't use it. Otherwise, gde will look for the file
# after it is done, and crash.
argchoice:Yes:(echo '' > out1; gde in1.blrevcomp; $RM_CMD -f in1.blrevcomp)&
argchoice:No:mv in1.blrevcomp out1
argvalue:1

out:out1
outformat:flat