#------------------------- BACHREST 4/09/06  --------------------------
item:BACHREST - Batch Rest. Site Search

# The directory fsapdoc must also be available in the $GDE_HELP_DIR,
# containing the file rest.asc from the FSAP package. Again, this
# directory can be implemented as a symbolic link.

itemmethod: (bachrest.csh in1 $DAT/REBASE/type2.lst in1.tmp $SOURCE $PROTO $PROT3 $BLUNT $PROT5 $SYMM $MINSITE $MAXSITE $FRAGLEAST $FRAGMOST $FRAGPRINT; ($GDE_TEXTEDIT in1.tmp; $RM_CMD in1*)& )&
itemhelp:doc/fsap/rest.txt
itemopen:gde_help_viewer.csh
itemopen:gde_help_viewer.csh

arg:SOURCE
argtype:chooser
arglabel:Source
argchoice:Commercial:C
argchoice:All:A
argvalue:1

arg:PROTO
argtype:chooser
arglabel:Prototypes only?
argchoice:Prototypes:P
argchoice:All:A
argvalue:0

arg:PROT3
argtype:chooser
arglabel:Include enzymes generating 3 prime protruding ends?
argchoice:Yes:Y
argchoice:No:N
argvalue:0

arg:BLUNT
argtype:chooser
arglabel:Include enzymes generating blunt ends?
argchoice:Yes:Y
argchoice:No:N
argvalue:0

arg:PROT5
argtype:chooser
arglabel:Include enzymes generating 5 prime protruding ends?
argchoice:Yes:Y
argchoice:No:N
argvalue:0

arg:SYMM
argtype:choice_menu
arglabel:Include
argchoice:Symmetric and Asymmetric sites:B
argchoice:Symmetric sites only:S
argchoice:Asymmetric sites only:A
argvalue:0

arg:MINSITE
argtype:slider
arglabel:Min. Recognition Seq. Length
argmin:4
argmax:21
argvalue:6

arg:MAXSITE
argtype:slider
arglabel:Max. Recognition Seq. Length
argmin:4
argmax:21
argvalue:21

arg:FRAGLEAST
argtype:slider
arglabel:Min. number of fragments generated
argmin:0
argmax:6000
argvalue:0

arg:FRAGMOST
argtype:slider
arglabel:Max. number of fragments generated
argmin:0
argmax:6000
argvalue:6000

arg:FRAGPRINT
argtype:slider
arglabel:Max. number of fragments printed
argmin:0
argmax:6000
argvalue:30

in:in1
informat:genbank
insave: