# This is the master BIRCH menulist file. Any changes made here
# will be lost the next time you update the BIRCH system.
# You can add menu items in $BIRCH/local. See the BIRCH Administrator's
# guide on "Adding locally-installed programs and documentation."
File
	New
	SPLITDB
	Open_XYLEMGB
	Open_XYLEMPIR
	ImportForeign
	ImportFree
	ExportForeign
	PrettyPrint
	SaveSel
	PrintSel
Documentation
	ViewDoc
Edit
	Sort
	CopyOut
	PasteIn
	Extract
	ExtractSubset
DNARNA
	AssembleContigs
	NUMSEQ
	BLrevcomp
	Translate	
	Ribosome
	Findall	
	Bachrest
	TACGrest	SLl
RNA_Struct
	MFOLD	S
	LoopTool
	sho_helix
Protein
	GREASE	Ssl
	GARNIER	Ssl
	PROT2NUC
	PROSTAT
Similarity
	GGSEARCH
	GLSEARCH
	LALIGN
	SSEARCH
	ALIGN
	SHUFFLE
	DXHOM
	PXHOM
Database
	FINDKEY
	FETCH
	FEATURES_KEY
	FEATURES_EXP
	DBINST
	DELILA
	BLASTP
	BLASTN
	BLASTX
	TBLASTN
	TBLASTX
	FASTADNA
	FASTAPROTEIN
	FASTXY
	TFASTA
Patterns
	TESTCODE
	TACGpat	SL
	GeneParser	S
	Consensus	S
	PATSER	S
	GCMAT-INF-GC	S
Alignment
	clustalx	SLl
	tcoffee
	dialign-tx
	mrtrans
	Degap
	MakeCons
	varpos
	reform
	jalview
	boxshade
	makelogo	S
Primers
	primer3b
	ospX	S
	MWcalculator
Phylogeny
	reticulate	S
	Phylip_doc
	Phylip
	DNADIST
	PROTDIST
	DNAPARS
	PROTPARS
	DNAML		
	PROML
	fastDNAml	SLl
Help
	Overview
	WindowsAndMenus
	Opening
	Selecting
	Grouping
	Properties
	EditMenu
	NewSequences
	Editing
	FAQ
	Index