#------------------- GI to TaxID ( 1/23/05) --------------------------

item:Convert GI to TaxID
itemmethod: python $BIRCH/script/flat2list.py in1 in1.nam; leash -mn SHoundTaxIDFromGiList -mpf in1.nam -of in1.taxid; python $BIRCH/script/list2flat.py in1.taxid in1.flat;rm in1.nam in1.taxid; $GDEOUTPUT
#itemmethod: (leashw -e .taxid -mn SHoundTaxIDFromGiList -mpf in1 -of in1.taxid; $GDEOUTPUT) &

itemhelp:doc/dGDE/SeqHound_API_Functions.html#SHoundTaxIDFromGiList
itemopen:browser.csh

in:in1
informat:flat
insave:

arg:GDEOUTPUT
arglabel:Output to new GDE window?
argtype:chooser
# Problem with Linux-Intel version of GDE (doesn't affect Solaris):
# If we declare an 'out' file, then it must always exist,
# even if we don't use it. Otherwise, gde will look for the file
# after it is done, and crash.
argchoice:Yes:(echo '' > out1.taxid; dgde in1.flat; $RM_CMD -f in1*)&
argchoice:No:mv in1.flat out1.taxid
argvalue:0

out:out1.taxid
outformat:flat