Links to the release notes for each package release.
A chart of the various program names and brief descriptions. Also
makes a handy documentation finder.
Online documentation for the more recent programs, including.
This documentation forms the basis of the printed manual as well as
online help and manual pages.
A cut down version of the manual to give an introduction to the main
programs in the package (around 45 pages when printed).
Phrap and Gap4 integration
This describes modifications to Phrap to allow it to work with
Experiment Files. This, coupled with a Phrap assembly menu in Gap4
gives easy integration. Additionally new editing features make problem
detection faster and consensus generation more reliable.
References and papers
A list of references about the package. This also includes, when
permissable, copies of the papers themselves.
This contains documentation on the Tcl interfaces to gap4 and methods
of building your own plug-in packages to extend gap4. This, the first
draft, deals primarily with Gap4.
This PDF file contains notes for a full 2-day course on using pregap4
and gap4. The course/data directory contains the data mentioned
within the course notes.
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