This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by kinfold configure 1.1, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  $ ./configure --prefix=/usr/local --cache-file=/dev/null --srcdir=.

## --------- ##
## Platform. ##
## --------- ##

hostname = deneb
uname -m = sun4u
uname -r = 5.10
uname -s = SunOS
uname -v = Generic_139555-08

/usr/bin/uname -p = sparc
/bin/uname -X     = System = SunOS
Node = deneb
Release = 5.10
KernelID = Generic_139555-08
Machine = sun4u
BusType = <unknown>
Serial = <unknown>
Users = <unknown>
OEM# = 0
Origin# = 1
NumCPU = 4

/bin/arch              = sun4
/usr/bin/arch -k       = sun4u
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /home/psgendb/local/script
PATH: /home/psgendb/local/bin-solaris-sparc
PATH: /usr/sfw/bin
PATH: /opt/SUNWspro/bin
PATH: /usr/bin
PATH: /usr/local/bin
PATH: /opt/csw/bin
PATH: /usr/ccs/bin
PATH: /usr/local/adminsys/bin
PATH: /usr/local/sybase/client/bin
PATH: /usr/X11/bin
PATH: /usr/dt/bin
PATH: /usr/openwin/bin
PATH: /usr/openwin/demo
PATH: /home/psgendb/script
PATH: /home/psgendb/bin-solaris-sparc
PATH: /home/psgendb/local/pkg/EMBOSS/solaris-sparc/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1796: checking for a BSD-compatible install
configure:1852: result: /opt/csw/bin/ginstall -c
configure:1863: checking whether build environment is sane
configure:1906: result: yes
configure:1934: checking for a thread-safe mkdir -p
configure:1973: result: /opt/csw/bin/gmkdir -p
configure:1986: checking for gawk
configure:2002: found /opt/csw/bin/gawk
configure:2013: result: gawk
configure:2024: checking whether make sets $(MAKE)
configure:2045: result: yes
configure:2234: checking if malloc debugging is wanted
configure:2254: result: no
configure:2308: checking for gcc
configure:2324: found /usr/sfw/bin/gcc
configure:2335: result: gcc
configure:2573: checking for C compiler version
configure:2580: gcc --version >&5
gcc (GCC) 3.4.3 (csl-sol210-3_4-branch+sol_rpath)
Copyright (C) 2004 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2583: $? = 0
configure:2590: gcc -v >&5
Reading specs from /usr/sfw/lib/gcc/sparc-sun-solaris2.10/3.4.3/specs
Configured with: /sfw10/builds/build/sfw10-patch/usr/src/cmd/gcc/gcc-3.4.3/configure --prefix=/usr/sfw --with-as=/usr/ccs/bin/as --without-gnu-as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-languages=c,c++ --enable-shared
Thread model: posix
gcc version 3.4.3 (csl-sol210-3_4-branch+sol_rpath)
configure:2593: $? = 0
configure:2600: gcc -V >&5
gcc: `-V' option must have argument
configure:2603: $? = 1
configure:2626: checking for C compiler default output file name
configure:2653: gcc    conftest.c  >&5
configure:2656: $? = 0
configure:2694: result: a.out
configure:2711: checking whether the C compiler works
configure:2721: ./a.out
configure:2724: $? = 0
configure:2741: result: yes
configure:2748: checking whether we are cross compiling
configure:2750: result: no
configure:2753: checking for suffix of executables
configure:2760: gcc -o conftest    conftest.c  >&5
configure:2763: $? = 0
configure:2787: result: 
configure:2793: checking for suffix of object files
configure:2819: gcc -c   conftest.c >&5
configure:2822: $? = 0
configure:2845: result: o
configure:2849: checking whether we are using the GNU C compiler
configure:2878: gcc -c   conftest.c >&5
configure:2884: $? = 0
configure:2901: result: yes
configure:2906: checking whether gcc accepts -g
configure:2936: gcc -c -g  conftest.c >&5
configure:2942: $? = 0
configure:3041: result: yes
configure:3058: checking for gcc option to accept ISO C89
configure:3132: gcc  -c -g -O2  conftest.c >&5
configure:3138: $? = 0
configure:3161: result: none needed
configure:3190: checking for style of include used by make
configure:3218: result: GNU
configure:3243: checking dependency style of gcc
configure:3334: result: gcc3
configure:3364: checking build system type
configure:3382: result: sparc-sun-solaris2.10
configure:3404: checking host system type
configure:3419: result: sparc-sun-solaris2.10
configure:3449: checking for strdup
configure:3505: gcc -o conftest -g -O2   conftest.c  >&5
conftest.c:33: warning: conflicting types for built-in function 'strdup'
configure:3511: $? = 0
configure:3529: result: yes
configure:3449: checking for memset
configure:3505: gcc -o conftest -g -O2   conftest.c  >&5
conftest.c:34: warning: conflicting types for built-in function 'memset'
configure:3511: $? = 0
configure:3529: result: yes
configure:3449: checking for strchr
configure:3505: gcc -o conftest -g -O2   conftest.c  >&5
conftest.c:35: warning: conflicting types for built-in function 'strchr'
configure:3511: $? = 0
configure:3529: result: yes
configure:3554: checking for ViennaRNA package
configure:3597: result:  headers in "../H" and library... "../lib"
configure:3607: checking how to run the C preprocessor
configure:3647: gcc -E  -I../H conftest.c
configure:3653: $? = 0
configure:3684: gcc -E  -I../H conftest.c
conftest.c:13:28: ac_nonexistent.h: No such file or directory
configure:3690: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "kinfold"
| #define PACKAGE_TARNAME "Kinfold"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "kinfold 1.1"
| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
| #define PACKAGE "Kinfold"
| #define VERSION "1.1"
| #define HAVE_STRDUP 1
| #define HAVE_MEMSET 1
| #define HAVE_STRCHR 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:3723: result: gcc -E
configure:3752: gcc -E  -I../H conftest.c
configure:3758: $? = 0
configure:3789: gcc -E  -I../H conftest.c
conftest.c:13:28: ac_nonexistent.h: No such file or directory
configure:3795: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "kinfold"
| #define PACKAGE_TARNAME "Kinfold"
| #define PACKAGE_VERSION "1.1"
| #define PACKAGE_STRING "kinfold 1.1"
| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
| #define PACKAGE "Kinfold"
| #define VERSION "1.1"
| #define HAVE_STRDUP 1
| #define HAVE_MEMSET 1
| #define HAVE_STRCHR 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:3833: checking for grep that handles long lines and -e
configure:3907: result: /usr/sfw/bin/ggrep
configure:3912: checking for egrep
configure:3990: result: /usr/sfw/bin/ggrep -E
configure:3995: checking for ANSI C header files
configure:4025: gcc -c -g -O2  -I../H conftest.c >&5
configure:4031: $? = 0
configure:4130: gcc -o conftest -g -O2  -I../H -L../lib  conftest.c  >&5
configure:4133: $? = 0
configure:4139: ./conftest
configure:4142: $? = 0
configure:4159: result: yes
configure:4183: checking for sys/types.h
configure:4204: gcc -c -g -O2  -I../H conftest.c >&5
configure:4210: $? = 0
configure:4226: result: yes
configure:4183: checking for sys/stat.h
configure:4204: gcc -c -g -O2  -I../H conftest.c >&5
configure:4210: $? = 0
configure:4226: result: yes
configure:4183: checking for stdlib.h
configure:4204: gcc -c -g -O2  -I../H conftest.c >&5
configure:4210: $? = 0
configure:4226: result: yes
configure:4183: checking for string.h
configure:4204: gcc -c -g -O2  -I../H conftest.c >&5
configure:4210: $? = 0
configure:4226: result: yes
configure:4183: checking for memory.h
configure:4204: gcc -c -g -O2  -I../H conftest.c >&5
configure:4210: $? = 0
configure:4226: result: yes
configure:4183: checking for strings.h
configure:4204: gcc -c -g -O2  -I../H conftest.c >&5
configure:4210: $? = 0
configure:4226: result: yes
configure:4183: checking for inttypes.h
configure:4204: gcc -c -g -O2  -I../H conftest.c >&5
configure:4210: $? = 0
configure:4226: result: yes
configure:4183: checking for stdint.h
configure:4204: gcc -c -g -O2  -I../H conftest.c >&5
configure:4210: $? = 0
configure:4226: result: yes
configure:4183: checking for unistd.h
configure:4204: gcc -c -g -O2  -I../H conftest.c >&5
configure:4210: $? = 0
configure:4226: result: yes
configure:4247: checking for stdlib.h
configure:4253: result: yes
configure:4247: checking for string.h
configure:4253: result: yes
configure:4247: checking for strings.h
configure:4253: result: yes
configure:4247: checking for unistd.h
configure:4253: result: yes
configure:4257: checking fold.h usability
configure:4274: gcc -c -g -O2  -I../H conftest.c >&5
configure:4280: $? = 0
configure:4294: result: yes
configure:4298: checking fold.h presence
configure:4313: gcc -E  -I../H conftest.c
configure:4319: $? = 0
configure:4333: result: yes
configure:4366: checking for fold.h
configure:4374: result: yes
configure:4389: checking for exp in -lm
configure:4424: gcc -o conftest -g -O2  -I../H -L../lib  conftest.c -lm   >&5
conftest.c:35: warning: conflicting types for built-in function 'exp'
configure:4430: $? = 0
configure:4448: result: yes
configure:4464: checking for stdlib.h
configure:4470: result: yes
configure:4604: checking for GNU libc compatible malloc
configure:4638: gcc -o conftest -g -O2  -I../H -L../lib  conftest.c -lm  >&5
configure:4641: $? = 0
configure:4647: ./conftest
configure:4650: $? = 0
configure:4666: result: yes
configure:4699: checking for stdlib.h
configure:4705: result: yes
configure:4839: checking for GNU libc compatible realloc
configure:4873: gcc -o conftest -g -O2  -I../H -L../lib  conftest.c -lm  >&5
configure:4876: $? = 0
configure:4882: ./conftest
configure:4885: $? = 0
configure:4901: result: yes
configure:4932: checking for an ANSI C-conforming const
configure:5007: gcc -c -g -O2  -I../H conftest.c >&5
configure:5013: $? = 0
configure:5028: result: yes
configure:5156: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by kinfold config.status 1.1, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on deneb

config.status:645: creating Example/Makefile
config.status:645: creating Makefile
config.status:645: creating config.h
config.status:930: executing depfiles commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=sparc-sun-solaris2.10
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_malloc_0_nonnull=yes
ac_cv_func_memset=yes
ac_cv_func_realloc_0_nonnull=yes
ac_cv_func_strchr=yes
ac_cv_func_strdup=yes
ac_cv_header_fold_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=sparc-sun-solaris2.10
ac_cv_lib_m_exp=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/sfw/bin/ggrep -E'
ac_cv_path_GREP=/usr/sfw/bin/ggrep
ac_cv_path_install='/opt/csw/bin/ginstall -c'
ac_cv_path_mkdir=/opt/csw/bin/gmkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_make_make_set=yes
am_cv_CC_dependencies_compiler_type=gcc3

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/Kinfold/missing --run aclocal-1.10'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/Kinfold/missing --run tar'
AUTOCONF='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/Kinfold/missing --run autoconf'
AUTOHEADER='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/Kinfold/missing --run autoheader'
AUTOMAKE='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/Kinfold/missing --run automake-1.10'
AWK='gawk'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2'
CPP='gcc -E'
CPPFLAGS=' -I../H'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/sfw/bin/ggrep -E'
EXEEXT=''
GREP='/usr/sfw/bin/ggrep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
ISODATE='2010-03-13'
LDFLAGS='-L../lib '
LIBOBJS=''
LIBS='-lRNA -lm '
LTLIBOBJS=''
MAKEINFO='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/Kinfold/missing --run makeinfo'
OBJEXT='o'
PACKAGE='Kinfold'
PACKAGE_BUGREPORT='rna@tbi.univie.ac.at'
PACKAGE_NAME='kinfold'
PACKAGE_STRING='kinfold 1.1'
PACKAGE_TARNAME='Kinfold'
PACKAGE_VERSION='1.1'
PATH_SEPARATOR=':'
SET_MAKE=''
SHELL='/bin/bash'
STRIP=''
VERSION='1.1'
ac_ct_CC='gcc'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='sparc-sun-solaris2.10'
build_alias=''
build_cpu='sparc'
build_os='solaris2.10'
build_vendor='sun'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='sparc-sun-solaris2.10'
host_alias=''
host_cpu='sparc'
host_os='solaris2.10'
host_vendor='sun'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='$(SHELL) /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/Kinfold/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/opt/csw/bin/gmkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define PACKAGE_NAME "kinfold"
#define PACKAGE_TARNAME "Kinfold"
#define PACKAGE_VERSION "1.1"
#define PACKAGE_STRING "kinfold 1.1"
#define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
#define PACKAGE "Kinfold"
#define VERSION "1.1"
#define HAVE_STRDUP 1
#define HAVE_MEMSET 1
#define HAVE_STRCHR 1
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_STRINGS_H 1
#define HAVE_UNISTD_H 1
#define HAVE_FOLD_H 1
#define HAVE_LIBM 1
#define HAVE_STDLIB_H 1
#define HAVE_MALLOC 1
#define HAVE_STDLIB_H 1
#define HAVE_REALLOC 1

configure: exit 0