/* Pebble Nice Names */ { class = "pal.alignment.AlignmentReaders$UnalignedAlignment", name = "Fasta Seqeuences"} { class = "pal.alignment.AlignmentReaders$PhylipClustalAlignment", name = "Philip/Clustal Alignment"} { class = "pal.distance.DistanceMatrix", name = "Distance Matrix"} { class = "pebble.tree.PebbleTree", name = "Annotated Tree"} { class = "pebble.eval.LikelihoodHolder", name = "Sub population data"} { class = "pal.distance.AlignmentDistanceMatrix", name = "Distance Matrix (from alignment)"} { class = "pal.substmodel.SubstitutionModel", name = "Substitution Model"} { class = "cebl.coalescent.PopulationParameters", name = "Population Parameters"} { class = "cebl.coalescent.CIPopulationParameters", name = "Estimated Parameters"} { class = "pal.tree.Tree", name = "Tree"} { class = "pal.tree.SimpleTree", name = "Tree"} { class = "pal.tree.ClockTree", name = "Clock-like Tree"} { class = "pal.tree.ReadTree", name = "Tree (from file)"} { class = "pebble.molevol.TOCDUtils", name = "Sample Information"} { class = "pebble.gui.DistanceTreeCombo", name = "Match Summary"} { class = "pal.alignment.Alignment", name = "Alignment"} { class = "pal.alignment.SimpleAlignment", name = "Alignment"} { class = "pebble.gui.HighlightedAlignment", name = "Profile Alignment"} { class = "pal.alignment.ReadAlignment", name = "Alignment (from file)"} { class = "pal.misc.TimeOrderCharacterData", name = "Sample Information"} { class = "pal.coalescent.ConstantPopulation", name = "Constant Population"} { class = "pal.coalescent.ExponentialGrowth", name = "Exponential Population"} { class = "pal.coalescent.ExpandingPopulation", name = "Expanding Population"} { class = "pal.misc.IdGroup", name = "Identifier group"} { class = "pal.coalescent.DemographicModel", name = "Demographic Model"} { class = "pal.coalescent.CoalescentIntervals", name = "Coalescent Intervals"} { class = "pal.coalescent.SkylinePlot", name = "Skyline Plot"} { class = "pal.alignment.SitePattern", name = "Site Pattern"} { class = "pal.alignment.BootstrappedAlignment", name = "Pseudo-replicate"} { class = "pal.alignment.JumbledAlignment", name = "Jumbled Alignment"} { class = "pal.alignment.StrippedAlignment", name = "Gap-less Alignment"} { class = "pal.tree.TreeDistanceMatrix", name = "Tree-induced Distances"}