### Name: kooperberg ### Title: Kooperberg Model-Based Background Correction ### Aliases: kooperberg ### Keywords: models ### ** Examples # This is example code for reading and background correcting GenePix data # given GenePix Results (gpr) files in the working directory (data not # provided). ## Not run: ##D genepixFiles <- dir(pattern="*\\.gpr$") # get the names of the GenePix image analysis output files in the current directory ##D RG <- read.maimages(genepixFiles, source="genepix", other.columns=c("F635 SD","B635 SD","F532 SD","B532 SD","B532 Mean","B635 Mean","F Pixels","B Pixels")) ##D RGmodel <- kooperberg(RG) ##D MA <- normalizeWithinArrays(RGmodel) ## End(Not run)