# CMAKE generated file: DO NOT EDIT! # Generated by "Unix Makefiles" Generator, CMake Version 2.8 # Default target executed when no arguments are given to make. default_target: all .PHONY : default_target #============================================================================= # Special targets provided by cmake. # Disable implicit rules so canoncical targets will work. .SUFFIXES: # Remove some rules from gmake that .SUFFIXES does not remove. SUFFIXES = .SUFFIXES: .hpux_make_needs_suffix_list # Suppress display of executed commands. $(VERBOSE).SILENT: # A target that is always out of date. cmake_force: .PHONY : cmake_force #============================================================================= # Set environment variables for the build. # The shell in which to execute make rules. SHELL = /bin/sh # The CMake executable. CMAKE_COMMAND = /home/psgendb/local/pkg/CASAVA_v1.8.2-build/bootstrap/bin/cmake # The command to remove a file. RM = /home/psgendb/local/pkg/CASAVA_v1.8.2-build/bootstrap/bin/cmake -E remove -f # The program to use to edit the cache. CMAKE_EDIT_COMMAND = /home/psgendb/local/pkg/CASAVA_v1.8.2-build/bootstrap/bin/ccmake # The top-level source directory on which CMake was run. CMAKE_SOURCE_DIR = /home/psgendb/local/pkg/CASAVA_v1.8.2/src # The top-level build directory on which CMake was run. CMAKE_BINARY_DIR = /home/psgendb/local/pkg/CASAVA_v1.8.2-build #============================================================================= # Targets provided globally by CMake. # Special rule for the target edit_cache edit_cache: @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Running CMake cache editor..." bootstrap/bin/ccmake -H$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) .PHONY : edit_cache # Special rule for the target edit_cache edit_cache/fast: edit_cache .PHONY : edit_cache/fast # Special rule for the target install install: preinstall @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Install the project..." bootstrap/bin/cmake -P cmake_install.cmake .PHONY : install # Special rule for the target install install/fast: preinstall/fast @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Install the project..." bootstrap/bin/cmake -P cmake_install.cmake .PHONY : install/fast # Special rule for the target install/local install/local: preinstall @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Installing only the local directory..." bootstrap/bin/cmake -DCMAKE_INSTALL_LOCAL_ONLY=1 -P cmake_install.cmake .PHONY : install/local # Special rule for the target install/local install/local/fast: install/local .PHONY : install/local/fast # Special rule for the target install/strip install/strip: preinstall @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Installing the project stripped..." bootstrap/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake .PHONY : install/strip # Special rule for the target install/strip install/strip/fast: install/strip .PHONY : install/strip/fast # Special rule for the target list_install_components list_install_components: @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Available install components are: \"Unspecified\"" .PHONY : list_install_components # Special rule for the target list_install_components list_install_components/fast: list_install_components .PHONY : list_install_components/fast # Special rule for the target rebuild_cache rebuild_cache: @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Running CMake to regenerate build system..." bootstrap/bin/cmake -H$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) .PHONY : rebuild_cache # Special rule for the target rebuild_cache rebuild_cache/fast: rebuild_cache .PHONY : rebuild_cache/fast # Special rule for the target test test: @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Running tests..." bootstrap/bin/ctest --force-new-ctest-process $(ARGS) .PHONY : test # Special rule for the target test test/fast: test .PHONY : test/fast # The main all target all: cmake_check_build_system $(CMAKE_COMMAND) -E cmake_progress_start /home/psgendb/local/pkg/CASAVA_v1.8.2-build/CMakeFiles /home/psgendb/local/pkg/CASAVA_v1.8.2-build/CMakeFiles/progress.marks $(MAKE) -f CMakeFiles/Makefile2 all $(CMAKE_COMMAND) -E cmake_progress_start /home/psgendb/local/pkg/CASAVA_v1.8.2-build/CMakeFiles 0 .PHONY : all # The main clean target clean: $(MAKE) -f CMakeFiles/Makefile2 clean .PHONY : clean # The main clean target clean/fast: clean .PHONY : clean/fast # Prepare targets for installation. preinstall: all $(MAKE) -f CMakeFiles/Makefile2 preinstall .PHONY : preinstall # Prepare targets for installation. preinstall/fast: $(MAKE) -f CMakeFiles/Makefile2 preinstall .PHONY : preinstall/fast # clear depends depend: $(CMAKE_COMMAND) -H$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) --check-build-system CMakeFiles/Makefile.cmake 1 .PHONY : depend #============================================================================= # Target rules for targets named CASAVA_CXX # Build rule for target. CASAVA_CXX: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 CASAVA_CXX .PHONY : CASAVA_CXX # fast build rule for target. CASAVA_CXX/fast: $(MAKE) -f CMakeFiles/CASAVA_CXX.dir/build.make CMakeFiles/CASAVA_CXX.dir/build .PHONY : CASAVA_CXX/fast #============================================================================= # Target rules for targets named CASAVA_OPT # Build rule for target. CASAVA_OPT: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 CASAVA_OPT .PHONY : CASAVA_OPT # fast build rule for target. CASAVA_OPT/fast: $(MAKE) -f CMakeFiles/CASAVA_OPT.dir/build.make CMakeFiles/CASAVA_OPT.dir/build .PHONY : CASAVA_OPT/fast #============================================================================= # Target rules for targets named CASAVA_CHART_DIRECTOR # Build rule for target. CASAVA_CHART_DIRECTOR: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 CASAVA_CHART_DIRECTOR .PHONY : CASAVA_CHART_DIRECTOR # fast build rule for target. CASAVA_CHART_DIRECTOR/fast: $(MAKE) -f opt/CMakeFiles/CASAVA_CHART_DIRECTOR.dir/build.make opt/CMakeFiles/CASAVA_CHART_DIRECTOR.dir/build .PHONY : CASAVA_CHART_DIRECTOR/fast #============================================================================= # Target rules for targets named CASAVA_CODE_MIN # Build rule for target. CASAVA_CODE_MIN: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 CASAVA_CODE_MIN .PHONY : CASAVA_CODE_MIN # fast build rule for target. CASAVA_CODE_MIN/fast: $(MAKE) -f opt/CMakeFiles/CASAVA_CODE_MIN.dir/build.make opt/CMakeFiles/CASAVA_CODE_MIN.dir/build .PHONY : CASAVA_CODE_MIN/fast #============================================================================= # Target rules for targets named CASAVA_ILMNSAMTOOLS # Build rule for target. CASAVA_ILMNSAMTOOLS: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 CASAVA_ILMNSAMTOOLS .PHONY : CASAVA_ILMNSAMTOOLS # fast build rule for target. CASAVA_ILMNSAMTOOLS/fast: $(MAKE) -f opt/CMakeFiles/CASAVA_ILMNSAMTOOLS.dir/build.make opt/CMakeFiles/CASAVA_ILMNSAMTOOLS.dir/build .PHONY : CASAVA_ILMNSAMTOOLS/fast #============================================================================= # Target rules for targets named CASAVA_MERGE_XSLT # Build rule for target. CASAVA_MERGE_XSLT: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 CASAVA_MERGE_XSLT .PHONY : CASAVA_MERGE_XSLT # fast build rule for target. CASAVA_MERGE_XSLT/fast: $(MAKE) -f opt/CMakeFiles/CASAVA_MERGE_XSLT.dir/build.make opt/CMakeFiles/CASAVA_MERGE_XSLT.dir/build .PHONY : CASAVA_MERGE_XSLT/fast #============================================================================= # Target rules for targets named CASAVA_SAMTOOLS # Build rule for target. CASAVA_SAMTOOLS: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 CASAVA_SAMTOOLS .PHONY : CASAVA_SAMTOOLS # fast build rule for target. CASAVA_SAMTOOLS/fast: $(MAKE) -f opt/CMakeFiles/CASAVA_SAMTOOLS.dir/build.make opt/CMakeFiles/CASAVA_SAMTOOLS.dir/build .PHONY : CASAVA_SAMTOOLS/fast #============================================================================= # Target rules for targets named doc # Build rule for target. doc: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 doc .PHONY : doc # fast build rule for target. doc/fast: $(MAKE) -f c++/CMakeFiles/doc.dir/build.make c++/CMakeFiles/doc.dir/build .PHONY : doc/fast #============================================================================= # Target rules for targets named casava_blt_util # Build rule for target. casava_blt_util: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_blt_util .PHONY : casava_blt_util # fast build rule for target. casava_blt_util/fast: $(MAKE) -f c++/lib/blt_util/CMakeFiles/casava_blt_util.dir/build.make c++/lib/blt_util/CMakeFiles/casava_blt_util.dir/build .PHONY : casava_blt_util/fast #============================================================================= # Target rules for targets named casava_blt_common # Build rule for target. casava_blt_common: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_blt_common .PHONY : casava_blt_common # fast build rule for target. casava_blt_common/fast: $(MAKE) -f c++/lib/blt_common/CMakeFiles/casava_blt_common.dir/build.make c++/lib/blt_common/CMakeFiles/casava_blt_common.dir/build .PHONY : casava_blt_common/fast #============================================================================= # Target rules for targets named casava_blt # Build rule for target. casava_blt: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_blt .PHONY : casava_blt # fast build rule for target. casava_blt/fast: $(MAKE) -f c++/lib/blt/CMakeFiles/casava_blt.dir/build.make c++/lib/blt/CMakeFiles/casava_blt.dir/build .PHONY : casava_blt/fast #============================================================================= # Target rules for targets named casava_starling # Build rule for target. casava_starling: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_starling .PHONY : casava_starling # fast build rule for target. casava_starling/fast: $(MAKE) -f c++/lib/starling/CMakeFiles/casava_starling.dir/build.make c++/lib/starling/CMakeFiles/casava_starling.dir/build .PHONY : casava_starling/fast #============================================================================= # Target rules for targets named casava_common # Build rule for target. casava_common: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_common .PHONY : casava_common # fast build rule for target. casava_common/fast: $(MAKE) -f c++/lib/common/CMakeFiles/casava_common.dir/build.make c++/lib/common/CMakeFiles/casava_common.dir/build .PHONY : casava_common/fast #============================================================================= # Target rules for targets named casava_io # Build rule for target. casava_io: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_io .PHONY : casava_io # fast build rule for target. casava_io/fast: $(MAKE) -f c++/lib/io/CMakeFiles/casava_io.dir/build.make c++/lib/io/CMakeFiles/casava_io.dir/build .PHONY : casava_io/fast #============================================================================= # Target rules for targets named casava_alignment # Build rule for target. casava_alignment: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_alignment .PHONY : casava_alignment # fast build rule for target. casava_alignment/fast: $(MAKE) -f c++/lib/alignment/CMakeFiles/casava_alignment.dir/build.make c++/lib/alignment/CMakeFiles/casava_alignment.dir/build .PHONY : casava_alignment/fast #============================================================================= # Target rules for targets named casava_basecalling # Build rule for target. casava_basecalling: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_basecalling .PHONY : casava_basecalling # fast build rule for target. casava_basecalling/fast: $(MAKE) -f c++/lib/basecalling/CMakeFiles/casava_basecalling.dir/build.make c++/lib/basecalling/CMakeFiles/casava_basecalling.dir/build .PHONY : casava_basecalling/fast #============================================================================= # Target rules for targets named casava_assembly # Build rule for target. casava_assembly: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_assembly .PHONY : casava_assembly # fast build rule for target. casava_assembly/fast: $(MAKE) -f c++/lib/assembly/CMakeFiles/casava_assembly.dir/build.make c++/lib/assembly/CMakeFiles/casava_assembly.dir/build .PHONY : casava_assembly/fast #============================================================================= # Target rules for targets named casava_variance # Build rule for target. casava_variance: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_variance .PHONY : casava_variance # fast build rule for target. casava_variance/fast: $(MAKE) -f c++/lib/variance/CMakeFiles/casava_variance.dir/build.make c++/lib/variance/CMakeFiles/casava_variance.dir/build .PHONY : casava_variance/fast #============================================================================= # Target rules for targets named casava_applications # Build rule for target. casava_applications: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_applications .PHONY : casava_applications # fast build rule for target. casava_applications/fast: $(MAKE) -f c++/lib/applications/CMakeFiles/casava_applications.dir/build.make c++/lib/applications/CMakeFiles/casava_applications.dir/build .PHONY : casava_applications/fast #============================================================================= # Target rules for targets named casava_demultiplex # Build rule for target. casava_demultiplex: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_demultiplex .PHONY : casava_demultiplex # fast build rule for target. casava_demultiplex/fast: $(MAKE) -f c++/lib/demultiplex/CMakeFiles/casava_demultiplex.dir/build.make c++/lib/demultiplex/CMakeFiles/casava_demultiplex.dir/build .PHONY : casava_demultiplex/fast #============================================================================= # Target rules for targets named casava_statistics # Build rule for target. casava_statistics: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_statistics .PHONY : casava_statistics # fast build rule for target. casava_statistics/fast: $(MAKE) -f c++/lib/statistics/CMakeFiles/casava_statistics.dir/build.make c++/lib/statistics/CMakeFiles/casava_statistics.dir/build .PHONY : casava_statistics/fast #============================================================================= # Target rules for targets named casava_SamMD # Build rule for target. casava_SamMD: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_SamMD .PHONY : casava_SamMD # fast build rule for target. casava_SamMD/fast: $(MAKE) -f c++/lib/SamMD/CMakeFiles/casava_SamMD.dir/build.make c++/lib/SamMD/CMakeFiles/casava_SamMD.dir/build .PHONY : casava_SamMD/fast #============================================================================= # Target rules for targets named casava_SamMD2Export # Build rule for target. casava_SamMD2Export: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_SamMD2Export .PHONY : casava_SamMD2Export # fast build rule for target. casava_SamMD2Export/fast: $(MAKE) -f c++/lib/SamMD2Export/CMakeFiles/casava_SamMD2Export.dir/build.make c++/lib/SamMD2Export/CMakeFiles/casava_SamMD2Export.dir/build .PHONY : casava_SamMD2Export/fast #============================================================================= # Target rules for targets named casava_eland_ms # Build rule for target. casava_eland_ms: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_eland_ms .PHONY : casava_eland_ms # fast build rule for target. casava_eland_ms/fast: $(MAKE) -f c++/lib/eland_ms/CMakeFiles/casava_eland_ms.dir/build.make c++/lib/eland_ms/CMakeFiles/casava_eland_ms.dir/build .PHONY : casava_eland_ms/fast #============================================================================= # Target rules for targets named casava_kagu # Build rule for target. casava_kagu: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_kagu .PHONY : casava_kagu # fast build rule for target. casava_kagu/fast: $(MAKE) -f c++/lib/kagu/CMakeFiles/casava_kagu.dir/build.make c++/lib/kagu/CMakeFiles/casava_kagu.dir/build .PHONY : casava_kagu/fast #============================================================================= # Target rules for targets named casava_smallRna # Build rule for target. casava_smallRna: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 casava_smallRna .PHONY : casava_smallRna # fast build rule for target. casava_smallRna/fast: $(MAKE) -f c++/lib/smallRna/CMakeFiles/casava_smallRna.dir/build.make c++/lib/smallRna/CMakeFiles/casava_smallRna.dir/build .PHONY : casava_smallRna/fast #============================================================================= # Target rules for targets named CASAVA # Build rule for target. CASAVA: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 CASAVA .PHONY : CASAVA # fast build rule for target. CASAVA/fast: $(MAKE) -f c++/bin/CMakeFiles/CASAVA.dir/build.make c++/bin/CMakeFiles/CASAVA.dir/build .PHONY : CASAVA/fast #============================================================================= # Target rules for targets named FastqConverter # Build rule for target. FastqConverter: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 FastqConverter .PHONY : FastqConverter # fast build rule for target. FastqConverter/fast: $(MAKE) -f c++/bin/CMakeFiles/FastqConverter.dir/build.make c++/bin/CMakeFiles/FastqConverter.dir/build .PHONY : FastqConverter/fast #============================================================================= # Target rules for targets named calculateDiversity # Build rule for target. calculateDiversity: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 calculateDiversity .PHONY : calculateDiversity # fast build rule for target. calculateDiversity/fast: $(MAKE) -f c++/bin/CMakeFiles/calculateDiversity.dir/build.make c++/bin/CMakeFiles/calculateDiversity.dir/build .PHONY : calculateDiversity/fast #============================================================================= # Target rules for targets named eland_ms # Build rule for target. eland_ms: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 eland_ms .PHONY : eland_ms # fast build rule for target. eland_ms/fast: $(MAKE) -f c++/bin/CMakeFiles/eland_ms.dir/build.make c++/bin/CMakeFiles/eland_ms.dir/build .PHONY : eland_ms/fast #============================================================================= # Target rules for targets named orphanAligner # Build rule for target. orphanAligner: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 orphanAligner .PHONY : orphanAligner # fast build rule for target. orphanAligner/fast: $(MAKE) -f c++/bin/CMakeFiles/orphanAligner.dir/build.make c++/bin/CMakeFiles/orphanAligner.dir/build .PHONY : orphanAligner/fast #============================================================================= # Target rules for targets named phageAlign # Build rule for target. phageAlign: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 phageAlign .PHONY : phageAlign # fast build rule for target. phageAlign/fast: $(MAKE) -f c++/bin/CMakeFiles/phageAlign.dir/build.make c++/bin/CMakeFiles/phageAlign.dir/build .PHONY : phageAlign/fast #============================================================================= # Target rules for targets named produceAlignStats # Build rule for target. produceAlignStats: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 produceAlignStats .PHONY : produceAlignStats # fast build rule for target. produceAlignStats/fast: $(MAKE) -f c++/bin/CMakeFiles/produceAlignStats.dir/build.make c++/bin/CMakeFiles/produceAlignStats.dir/build .PHONY : produceAlignStats/fast #============================================================================= # Target rules for targets named squashGenome # Build rule for target. squashGenome: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 squashGenome .PHONY : squashGenome # fast build rule for target. squashGenome/fast: $(MAKE) -f c++/libexec/Alignment/CMakeFiles/squashGenome.dir/build.make c++/libexec/Alignment/CMakeFiles/squashGenome.dir/build .PHONY : squashGenome/fast #============================================================================= # Target rules for targets named statsToSignalMeans # Build rule for target. statsToSignalMeans: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 statsToSignalMeans .PHONY : statsToSignalMeans # fast build rule for target. statsToSignalMeans/fast: $(MAKE) -f c++/libexec/BaseCalls/CMakeFiles/statsToSignalMeans.dir/build.make c++/libexec/BaseCalls/CMakeFiles/statsToSignalMeans.dir/build .PHONY : statsToSignalMeans/fast #============================================================================= # Target rules for targets named blt # Build rule for target. blt: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 blt .PHONY : blt # fast build rule for target. blt/fast: $(MAKE) -f c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/blt.dir/build.make c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/blt.dir/build .PHONY : blt/fast #============================================================================= # Target rules for targets named compressXPair # Build rule for target. compressXPair: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 compressXPair .PHONY : compressXPair # fast build rule for target. compressXPair/fast: $(MAKE) -f c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/compressXPair.dir/build.make c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/compressXPair.dir/build .PHONY : compressXPair/fast #============================================================================= # Target rules for targets named countFastaBases # Build rule for target. countFastaBases: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 countFastaBases .PHONY : countFastaBases # fast build rule for target. countFastaBases/fast: $(MAKE) -f c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/countFastaBases.dir/build.make c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/countFastaBases.dir/build .PHONY : countFastaBases/fast #============================================================================= # Target rules for targets named kagu # Build rule for target. kagu: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 kagu .PHONY : kagu # fast build rule for target. kagu/fast: $(MAKE) -f c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/kagu.dir/build.make c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/kagu.dir/build .PHONY : kagu/fast #============================================================================= # Target rules for targets named makeGStudioBAMIndex # Build rule for target. makeGStudioBAMIndex: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 makeGStudioBAMIndex .PHONY : makeGStudioBAMIndex # fast build rule for target. makeGStudioBAMIndex/fast: $(MAKE) -f c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/makeGStudioBAMIndex.dir/build.make c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/makeGStudioBAMIndex.dir/build .PHONY : makeGStudioBAMIndex/fast #============================================================================= # Target rules for targets named samMD # Build rule for target. samMD: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 samMD .PHONY : samMD # fast build rule for target. samMD/fast: $(MAKE) -f c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/samMD.dir/build.make c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/samMD.dir/build .PHONY : samMD/fast #============================================================================= # Target rules for targets named samMD2Export # Build rule for target. samMD2Export: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 samMD2Export .PHONY : samMD2Export # fast build rule for target. samMD2Export/fast: $(MAKE) -f c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/samMD2Export.dir/build.make c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/samMD2Export.dir/build .PHONY : samMD2Export/fast #============================================================================= # Target rules for targets named sortedToBam # Build rule for target. sortedToBam: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 sortedToBam .PHONY : sortedToBam # fast build rule for target. sortedToBam/fast: $(MAKE) -f c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/sortedToBam.dir/build.make c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/sortedToBam.dir/build .PHONY : sortedToBam/fast #============================================================================= # Target rules for targets named starling # Build rule for target. starling: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 starling .PHONY : starling # fast build rule for target. starling/fast: $(MAKE) -f c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/starling.dir/build.make c++/libexec/DataAnalysis/PostAlignment/CMakeFiles/starling.dir/build .PHONY : starling/fast #============================================================================= # Target rules for targets named demultiplexBcls # Build rule for target. demultiplexBcls: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 demultiplexBcls .PHONY : demultiplexBcls # fast build rule for target. demultiplexBcls/fast: $(MAKE) -f c++/libexec/Demultiplex/CMakeFiles/demultiplexBcls.dir/build.make c++/libexec/Demultiplex/CMakeFiles/demultiplexBcls.dir/build .PHONY : demultiplexBcls/fast #============================================================================= # Target rules for targets named trimmer # Build rule for target. trimmer: cmake_check_build_system $(MAKE) -f CMakeFiles/Makefile2 trimmer .PHONY : trimmer # fast build rule for target. trimmer/fast: $(MAKE) -f c++/libexec/SmallRna/CMakeFiles/trimmer.dir/build.make c++/libexec/SmallRna/CMakeFiles/trimmer.dir/build .PHONY : trimmer/fast # Help Target help: @echo "The following are some of the valid targets for this Makefile:" @echo "... all (the default if no target is provided)" @echo "... clean" @echo "... depend" @echo "... CASAVA_CXX" @echo "... CASAVA_OPT" @echo "... edit_cache" @echo "... install" @echo "... install/local" @echo "... install/strip" @echo "... list_install_components" @echo "... rebuild_cache" @echo "... test" @echo "... CASAVA_CHART_DIRECTOR" @echo "... CASAVA_CODE_MIN" @echo "... CASAVA_ILMNSAMTOOLS" @echo "... CASAVA_MERGE_XSLT" @echo "... CASAVA_SAMTOOLS" @echo "... doc" @echo "... casava_blt_util" @echo "... casava_blt_common" @echo "... casava_blt" @echo "... casava_starling" @echo "... casava_common" @echo "... casava_io" @echo "... casava_alignment" @echo "... casava_basecalling" @echo "... casava_assembly" @echo "... casava_variance" @echo "... casava_applications" @echo "... casava_demultiplex" @echo "... casava_statistics" @echo "... casava_SamMD" @echo "... casava_SamMD2Export" @echo "... casava_eland_ms" @echo "... casava_kagu" @echo "... casava_smallRna" @echo "... CASAVA" @echo "... FastqConverter" @echo "... calculateDiversity" @echo "... eland_ms" @echo "... orphanAligner" @echo "... phageAlign" @echo "... produceAlignStats" @echo "... squashGenome" @echo "... statsToSignalMeans" @echo "... blt" @echo "... compressXPair" @echo "... countFastaBases" @echo "... kagu" @echo "... makeGStudioBAMIndex" @echo "... samMD" @echo "... samMD2Export" @echo "... sortedToBam" @echo "... starling" @echo "... demultiplexBcls" @echo "... trimmer" .PHONY : help #============================================================================= # Special targets to cleanup operation of make. # Special rule to run CMake to check the build system integrity. # No rule that depends on this can have commands that come from listfiles # because they might be regenerated. cmake_check_build_system: $(CMAKE_COMMAND) -H$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) --check-build-system CMakeFiles/Makefile.cmake 0 .PHONY : cmake_check_build_system