// -*- mode: c++; indent-tabs-mode: nil; -*- // // CodeMin : lightweight minimization library from the // CodeAxe phylogenetic analysis package // // http://www.phrap.org // // Copyright 2009 Christopher T Saunders (ctsa@u.washington.edu) // // Permission is hereby granted, free of charge, to any person obtaining a copy // of this software and associated documentation files (the "Software"), to deal // in the Software without restriction, including without limitation the rights // to use, copy, modify, merge, publish, distribute, sublicense, and/or sell // copies of the Software, and to permit persons to whom the Software is // furnished to do so, subject to the following conditions: // // The above copyright notice and this permission notice shall be included in // all copies or substantial portions of the Software. // // THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR // IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, // FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE // AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER // LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, // OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN // THE SOFTWARE. // /// \file #include #include #include #include const unsigned N_DIM(5); struct test_minfunc : public codemin::minfunc_interface { test_minfunc(const std::vector& a) : _a(a) {} unsigned dim() const { return N_DIM; } double val(const double* x) { const unsigned nv(dim()); double val(0.); for(unsigned i(0);(i+1) _a; }; int main() { static const double line_tol(1e-7); static const double start_ratio(0.05); static const double min_start_dist(1e-6); static const double end_tol(1e-7); static const unsigned max_iter(200); double x[N_DIM] = {2.0, 4.0, -11.0, -0.9, 0.2}; static const unsigned N_DIM2(N_DIM*N_DIM); double conj_dir[N_DIM2]; std::fill(conj_dir,conj_dir+N_DIM2,0.); for(unsigned i(0);i offsets(N_DIM); for(unsigned i(0);i