// -*- mode: c++; indent-tabs-mode: nil; -*- // // CodeMin : lightweight minimization library from the // CodeAxe phylogenetic analysis package // // http://www.phrap.org // // Copyright 2007, 2009 Christopher T Saunders (ctsa@u.washington.edu) // // Permission is hereby granted, free of charge, to any person obtaining a copy // of this software and associated documentation files (the "Software"), to deal // in the Software without restriction, including without limitation the rights // to use, copy, modify, merge, publish, distribute, sublicense, and/or sell // copies of the Software, and to permit persons to whom the Software is // furnished to do so, subject to the following conditions: // // The above copyright notice and this permission notice shall be included in // all copies or substantial portions of the Software. // // THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR // IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, // FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE // AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER // LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, // OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN // THE SOFTWARE. // /// \file #ifndef __MINIMIZE_CONJ_DIRECTION_H #define __MINIMIZE_CONJ_DIRECTION_H //#include "minfunc_interface.h" namespace codemin { /// \brief minimize function using modified conjugate direction set /// method from (Powell, 1964) /// /// \param vec_current starting function argument; on exit set to /// minimum function argument /// /// \param conj_direction_set starting conjugate direction set, scale /// of conjugate vectors provides a hint to the minimizer of the scale /// of parameter space to explore /// /// \param mf minimization function; must fulfill /// minfunc_interface /// /// \param start_tol starting tolerance (on min function value /// improvement in each iteration) this will be decreased by one order /// of magnitude at each iteration where tolerance is not exceeded /// until it reaches (or falls below) end_tol, at which point /// minimization will terminate when end_tol is not exceeded. This is /// a heuristic speed-up for long minimizations. /// /// \param end_tol final tolerance (on min function value improvement /// in each iteration) /// /// \param line_tol minimum change in argument value per iteration during /// line minimization /// /// \param f_min final minimum function value /// /// \param iter number of iterations required to reach minimum /// /// \param final_iter_delta_f function improvement in final iteration /// /// \param max_iter maximum number of conj dir iterations to attempt /// template // = minfunc_interface void minimize_conj_direction(FloatType* vec_current, FloatType* conj_direction_set, MinFunc& mf, FloatType& start_tol, const FloatType end_tol, const FloatType line_tol, FloatType& f_min, unsigned& iter, FloatType& final_iter_delta_f, const unsigned max_iter); } #include "minimize_conj_direction.hh" #endif