################################################################################
##
## Copyright (c) 2007-2011 Illumina, Inc.
##
## This software is covered by the "Illumina Genome Analyzer Software
## License Agreement" and the "Illumina Source Code License Agreement",
## and certain third party copyright/licenses, and any user of this
## source file is bound by the terms therein (see accompanying files
## Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
## Illumina_Source_Code_License_Agreement.pdf and third party
## copyright/license notices).
##
## This file is part of the Consensus Assessment of Sequence And VAriation
## (CASAVA) software package.
##
## file AnalyseBarcodes.mk
##
## brief Partial makefile to navigate the hierarchy of projects and samples.
##
## author Come Raczy
##
################################################################################

ifeq (,$(currentBarcodes))
$(error ERROR: project $(project): empty list of samples)
endif

barcode := $(word 1, $(currentBarcodes))

ifeq (1,$(words $(currentBarcodes)))
currentBarcodes :=
else
currentBarcodes := $(wordlist 2, $(words $(currentBarcodes)), $(currentBarcodes))
endif

# Target to create the config file for this dataset
datasetConfig := Makefiles/$(project)_$(sample)_$(barcode)_L00$(lane).mk
$(datasetConfig): project := $(project)
$(datasetConfig): sample := $(sample)
$(datasetConfig): lane := $(lane)
$(datasetConfig): barcode := $(barcode)
$(datasetConfig): config.xml Makefiles/config.mk
	$(CONFIGURE_DATASET) --project "$(project)" --sample "$(sample)" \
	    --barcode "$(barcode)" --lane "$(lane)" \
	    --reference "$($(project)_$(sample)_$(lane)_$(barcode)_REFERENCE)" $< > $(SAFEPIPETARGET)

include $(datasetConfig)

.PHONY: $($(dataset)_POSTRUN)
$($(dataset)_POSTRUN): $($(dataset)_TARGET)
	( $(LOG_INFO) analysis $($(dataset)_ANALYSIS) finished successfully for $(dataset).); $($(dataset)_DATASET_POST_RUN_COMMAND)