################################################################################
##
## Copyright (c) 2007-2009 Illumina, Inc.
##
## This software is covered by the "Illumina Genome Analyzer Software
## License Agreement" and the "Illumina Source Code License Agreement",
## and certain third party copyright/licenses, and any user of this
## source file is bound by the terms therein (see accompanying files
## Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
## Illumina_Source_Code_License_Agreement.pdf and third party
## copyright/license notices).
##
## This file is part of the Consensus Assessment of Sequence And VAriation 
## (CASAVA) software package.
##
## file CMakeLists.txt
##
## Configuration file for the c++ subfolder
##
## author Come Raczy
##
################################################################################

set(CMAKE_SKIP_BUILD_RPATH  FALSE)
set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)

set (CASAVA_CXX_EXECUTABLE_CMAKE "${CMAKE_SOURCE_DIR}/cmake/cxxExecutable.cmake")
set (CASAVA_CXX_LIBRARY_CMAKE "${CMAKE_SOURCE_DIR}/cmake/cxxLibrary.cmake")
set (CASAVA_CXX_CONFIGURE_CMAKE "${CMAKE_SOURCE_DIR}/cmake/cxxConfigure.cmake")

set(CASAVA_CXX_CONFIG_H_DIR ${CMAKE_CURRENT_BINARY_DIR}/common)
include ("${CASAVA_CXX_CONFIGURE_CMAKE}")

if (HAVE_CPPUNIT AND CASAVA_UNIT_TESTS)
    set (CASAVA_CPPUNIT_CMAKE "${CMAKE_SOURCE_DIR}/cmake/cppunit.cmake")
    add_subdirectory (unittest)
endif (HAVE_CPPUNIT AND CASAVA_UNIT_TESTS)


##
## The include directories
##
set (CASAVA_CXX_ALL_INCLUDES "${CMAKE_CURRENT_SOURCE_DIR}/include")

##
## Build all the libraries for the project
##
add_subdirectory (lib)

##
## build all the applications for the project
##

add_subdirectory (bin)

##
## build all the internal applications for the project
##

add_subdirectory (libexec)

##
## build the documentation when available
##
include  (FindDoxygen)
message (STATUS "Doxygen: ${DOXYGEN_EXECUTABLE}. Dot: ${DOXYGEN_DOT_EXECUTABLE}.")
if (DOXYGEN_FOUND)
    set (DOXYFILE ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile)
    message (STATUS "Creating Doxygen config file: ${DOXYFILE}")
    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile.in ${DOXYFILE} @ONLY IMMEDIATE)
    add_custom_target(doc ${DOXYGEN_EXECUTABLE} ${DOXYFILE})
endif (DOXYGEN_FOUND)