################################################################################
##
## Copyright (c) 2007-2009 Illumina, Inc.
##
## This software is covered by the "Illumina Genome Analyzer Software
## License Agreement" and the "Illumina Source Code License Agreement",
## and certain third party copyright/licenses, and any user of this
## source file is bound by the terms therein (see accompanying files
## Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
## Illumina_Source_Code_License_Agreement.pdf and third party
## copyright/license notices).
##
## This file is part of the Consensus Assessment of Sequence And VAriation 
## (CASAVA) software package.
##
## file configure
##
## Configuration file for the c++/programs subdirectory
##
## author Come Raczy
##
################################################################################

include(${CASAVA_CXX_EXECUTABLE_CMAKE})

file (GLOB CASAVA_PROGRAM_SOURCE_LIST [a-zA-Z0-9]*.cpp)

##
## Generic rule for all the other programs
##
set(BAM_LIBRARY "${SAMTOOLS_DIR}/libbam.a")
foreach(CASAVA_PROGRAM_SOURCE ${CASAVA_PROGRAM_SOURCE_LIST})
    get_filename_component(CASAVA_PROGRAM ${CASAVA_PROGRAM_SOURCE} NAME_WE)
    add_executable        (${CASAVA_PROGRAM} ${CASAVA_PROGRAM_SOURCE})
    target_link_libraries (${CASAVA_PROGRAM} ${CASAVA_AVAILABLE_LIBRARIES}
                           ${BAM_LIBRARY} ${Boost_LIBRARIES} ${LIBXML2_LIBRARIES}  
                           ${CASAVA_ADDITIONAL_LIB} )
    install(TARGETS ${CASAVA_PROGRAM} RUNTIME DESTINATION ${CASAVA_BINDIR})
endforeach(CASAVA_PROGRAM_SOURCE)