/**
 ** Copyright (c) 2007-2009 Illumina, Inc.
 **
 ** This software is covered by the "Illumina Genome Analyzer Software
 ** License Agreement" and the "Illumina Source Code License Agreement",
 ** and certain third party copyright/licenses, and any user of this
 ** source file is bound by the terms therein (see accompanying files
 ** Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
 ** Illumina_Source_Code_License_Agreement.pdf and third party
 ** copyright/license notices).
 **
 ** This file is part of the Consensus Assessment of Sequence And VAriation
 ** (CASAVA) software package.
 **
 ** \file MatchDescriptor.hh
 **
 ** \brief Commonly used functions and definitions
 **
 ** \author Richard Shaw
 **/

#ifndef CASAVA_ALIGNMENT_MATCH_DESCRIPTOR_HH
#define CASAVA_ALIGNMENT_MATCH_DESCRIPTOR_HH

/*****************************************************************************/

#include <string>
#include <sstream>

/*****************************************************************************/

class MatchDescriptor {

public:
    MatchDescriptor(const std::string& refStr, const std::string& readStr);
    std::string str() { return ostrm_.str(); }

private:
    std::ostringstream ostrm_;
};


/*****************************************************************************/

#endif // #ifndef CASAVA_ALIGNMENT_MATCH_DESCRIPTOR_HH

/*****************************************************************************/