#ifndef SAM2EXPORT_HH_
#define SAM2EXPORT_HH_

/**
 * Project     : CASAVA
 * Module      : $RCSfile: Sam2Export.hh,v $
 * @author     : Lukasz Szajkowski
 * Copyright   : Copyright (c) Illumina 2008, 2009. All rights reserved.
 *
 ** This software is covered by the "Illumina Genome Analyzer Software
 ** License Agreement" and the "Illumina Source Code License Agreement",
 ** and certain third party copyright/licenses, and any user of this
 ** source file is bound by the terms therein (see accompanying files
 ** Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
 ** Illumina_Source_Code_License_Agreement.pdf and third party
 ** copyright/license notices).
 *
 */

#include "applications/Application.hh"

#include "common/Compression.hh"
#include "common/CommandLine.hh"
#include "applications/CasavaOptions.hh"

namespace ca {
namespace applications {

/**
 * @class Sam2Export
 *
 * @brief This is just a wrapper arround export format example
 *
 *
 * $Header $
 */

class Sam2Export : public ca::applications::Application {
public:
	Sam2Export(CasavaOptions &options) : Application(options) {

	}
	/**
	 * Provide a detailed description of this function.
	 * @param numArgs number of arguments
	 * @param args array with command line parameters
	 *
	 * @return status
	 */
	int run();
	virtual ~Sam2Export() {};
};

}
} // end namespace casava{ namespace { applications

#endif /*SAM2EXPORT_HH_*/