// -*- mode: c++; indent-tabs-mode: nil; -*-
//
// Copyright 2009 Illumina, Inc.
//
// This software is covered by the "Illumina Genome Analyzer Software
// License Agreement" and the "Illumina Source Code License Agreement",
// and certain third party copyright/licenses, and any user of this
// source file is bound by the terms therein (see accompanying files
// Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
// Illumina_Source_Code_License_Agreement.pdf and third party
// copyright/license notices).
//
//

/// \file
///
/// \author Chris Saunders
///

#ifndef __ADJUST_JOINT_EPROB_HH
#define __ADJUST_JOINT_EPROB_HH

#include "blt_common/blt_shared.hh"
#include "blt_common/snp_pos_info.hh"


void
adjust_joint_eprob(const blt_options& opt,
                   const snp_pos_info& pi,
                   std::vector<float>& dependent_eprob,
                   const bool is_depenent);

#endif