/**
 ** Copyright (c) 2007-2009 Illumina, Inc.
 **
 ** This software is covered by the "Illumina Genome Analyzer Software
 ** License Agreement" and the "Illumina Source Code License Agreement",
 ** and certain third party copyright/licenses, and any user of this
 ** source file is bound by the terms therein (see accompanying files
 ** Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
 ** Illumina_Source_Code_License_Agreement.pdf and third party
 ** copyright/license notices).
 **
 ** \file ElandOutput.hh
 **
 ** \brief Declaration for the ElandOutput class.
 **
 **
 ** \author Mohamed Zerara
 **/
#ifndef ELAND_OUTPUT_HH_
#define ELAND_OUTPUT_HH_

#include <string>
#include "common/ParameterTypes.hh"


namespace casava { namespace common {

class ElandOutput
{
public:
    /**
     * \brief default constructor
     */
    ElandOutput();

    /**
     * \brief destructor
     */
    virtual ~ElandOutput();

    /**
     * \brief get read ID
     */
    const std::string &getReadID();

    /**
     * \brief get read
     */
    const std::string &getRead();

    /**
     * \brief get neighborhood
     */
    const std::string &getNhood();

    /**
     * \brieg get details
     */
    const std::string &getDetails();

    void setDetails(const std::string &details)
    { details_ = details; }

    /**
     * \brief input stream operator for object of type ElandOutput
     */
    friend std::istream & operator>>(std::istream& is, ElandOutput& eland);

    friend std::ostream & operator<<(std::ostream &os, ElandOutput &eland);

    ElandOutput(const ElandOutput&);

    ElandOutput& operator=(const ElandOutput& eland);

private:

    std::string readID_;
    std::string read_;
    std::string nhood_;
    std::string details_;
};

std::istream & operator>>(std::istream& is, ElandOutput& eland);

} }

#endif /* ELAND_OUTPUT_HH_ */