/**
 ** Copyright (c) 2007-2009 Illumina, Inc.
 **
 ** This software is covered by the "Illumina Genome Analyzer Software
 ** License Agreement" and the "Illumina Source Code License Agreement",
 ** and certain third party copyright/licenses, and any user of this
 ** source file is bound by the terms therein (see accompanying files
 ** Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
 ** Illumina_Source_Code_License_Agreement.pdf and third party
 ** copyright/license notices).
 **
 ** This file is part of the Consensus Assessment of Sequence And VAriation
 ** (CASAVA) software package.
 **
 ** \file ReadsIdx.hh
 **
 ** \brief Definition of Reads.idx file columns.
 **
 ** \author Roman Petrovski
 **/

#ifndef CASAVA_IO_READS_IDX_HH
#define CASAVA_IO_READS_IDX_HH

namespace casava
{
namespace io
{

enum enReadsIdxFields
{
    eReadsIdxTotalReads=0,
    eReadsIdxTotalBases=1,
    eReadsIdxUsedReads=2,
    eReadsIdxUsedBases=3,
    eReadsIdxGoodReads=4,
    eReadsIdxGoodReadBases=5,
    eReadsIdxFailedTileFilt=6,
    eReadsIdxFailedFilt=7,
    eReadsIdxFailedQC=8,
    eReadsIdxSingleExclude=9,
    eReadsIdxNonUniqueAlign=10,
    eReadsIdxGoodPairs=11,
    eReadsIdxMixedPairs=12,
    eReadsIdxRiboCount=13,
    eReadsIdxMitoCount=14,
    eReadsIdxSplicedReads=15,
    eReadsIdxExportFileDir=16,
    eReadsIdxExportSet=17,
    eReadsIdxDate=18,
    eReadsIdxInstrumentName=19,
    eReadsIdxRunID=20,
    eReadsIdxLaneNumber=21,
    eReadsIdxBarcode=22,
    eReadsIdxHighSDFragmentLength=23,
    eReadsIdxLowSDFragmentLength=24,
    eReadsIdxMaxFragmentLength=25,
    eReadsIdxMedianFragmentLength=26,
    eReadsIdxMinFragmentLength=27,
    eReadsIdxNominalOrientation=28,
    eReadsIdxRead1Length=29,
    eReadsIdxRead2Length=30,
    readsIdxFieldsCount
};


} // namespce io
} // namespace casava

#endif // CASAVA_IO_READS_IDX_HH