/**
 ** Copyright (c) 2007-2010 Illumina, Inc.
 **
 ** This software is covered by the "Illumina Genome Analyzer Software
 ** License Agreement" and the "Illumina Source Code License Agreement",
 ** and certain third party copyright/licenses, and any user of this
 ** source file is bound by the terms therein (see accompanying files
 ** Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
 ** Illumina_Source_Code_License_Agreement.pdf and third party
 ** copyright/license notices).
 **
 ** This file is part of the Consensus Assessment of Sequence And VAriation
 ** (CASAVA) software package.
 **
 **/

#ifndef TRIMMER_RESULT_H
#define TRIMMER_RESULT_H

#include <cstdio>
#include "TrimmerErrors.h"
#include "TrimmerReport.h"

struct CTrimmerResult
{
    int    m_Status;
    int    m_Count;
    int    m_SuffixPosition;
    int    m_Score;
    char * m_Matcher;

    CTrimmerResult()
        : m_Status(OKAY)
        , m_Count(0)
        , m_SuffixPosition(0)
        , m_Score(0)
        , m_Matcher(0)
    {}

    void Print(char * readString,
               int    threshold, // for stdout
               char * preString = 0);

    void PrintFastq(char * readString,
		    int    threshold, // for stdout
		    char * name1,
		    char * name2,
		    char * quality,
		    int    nPadLen,
		    int    nExtraBases,
		    TrimmerReport & report );

    void Print(FILE * & fpWrite,
               char *   readString,
               int      threshold,
               char *   preString = 0);
private:
    static char ms_PrefixString[MAX_READ_SIZE];
};

#endif // TRIMMER_RESULT_H