// -*- mode: c++; indent-tabs-mode: nil; -*-
//
// Copyright 2009 Illumina, Inc.
//
// This software is covered by the "Illumina Genome Analyzer Software
// License Agreement" and the "Illumina Source Code License Agreement",
// and certain third party copyright/licenses, and any user of this
// source file is bound by the terms therein (see accompanying files
// Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
// Illumina_Source_Code_License_Agreement.pdf and third party
// copyright/license notices).
//
//

/// \file

/// \author Chris Saunders
///
#ifndef __STARLING_STREAMS_HH
#define __STARLING_STREAMS_HH

#include "blt_common/blt_streams.hh"
#include "blt_util/bam_dumper.hh"
#include "starling/starling_shared.hh"


struct starling_streams : public blt_streams {

    starling_streams(const starling_options& client_opt,
                     const prog_info& pinfo,
                     const char* const cmdline,
                     const bam_header_t* const bam_header);
   
    ~starling_streams();

    std::ostream* bindel_diploid_osptr() const { return _bindel_diploid_osptr.get(); }
    bam_dumper* realign_bam_ptr() const { return _realign_bam_ptr.get(); }

private:
    typedef blt_streams base_t;

    std::auto_ptr<std::ostream> _bindel_diploid_osptr;
    std::auto_ptr<bam_dumper> _realign_bam_ptr;
};


#endif