// -*- mode: c++; indent-tabs-mode: nil; -*-
//
// Copyright 2009 Illumina, Inc.
//
// This software is covered by the "Illumina Genome Analyzer Software
// License Agreement" and the "Illumina Source Code License Agreement",
// and certain third party copyright/licenses, and any user of this
// source file is bound by the terms therein (see accompanying files
// Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
// Illumina_Source_Code_License_Agreement.pdf and third party
// copyright/license notices).
//
//

/// \file

/// \author Chris Saunders
///

#include "blt_common/snp_pos_info.hh"

#include <iomanip>
#include <iostream>



std::ostream&
operator<<(std::ostream& os,
           const base_call& bc){
    const char strand(bc.is_fwd_strand ? 'F' : 'R');
    os << "base: " << id_to_base(bc.base_id)
       << " P(error) " << std::setw(14) << std::setprecision(8) << std::left << bc.error_prob()
       << " strand: " << strand
#ifdef BC_DEBUG
       << " read_pos: " << (bc.read_pos+1)
       << " read_size: " << bc.read_size
#endif
       << " is_call_filter: " << bc.is_call_filter;
    return os;
}



std::ostream&
operator<<(std::ostream& os,
           const snp_pos_info& pci){
    os << "ref: " << pci.ref_base;
    const unsigned bs(pci.calls.size());
    for(unsigned i(0);i<bs;++i) os << "\n" << pci.calls[i];
    return os;
}