/**
 ** Copyright (c) 2007-2010 Illumina, Inc.
 **
 ** This software is covered by the "Illumina Genome Analyzer Software
 ** License Agreement" and the "Illumina Source Code License Agreement",
 ** and certain third party copyright/licenses, and any user of this
 ** source file is bound by the terms therein (see accompanying files
 ** Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
 ** Illumina_Source_Code_License_Agreement.pdf and third party
 ** copyright/license notices).
 **
 ** This file is part of the Consensus Assessment of Sequence And VAriation
 ** (CASAVA) software package.
 **
 **/

#include <cstring>
#include "smallRna/TrimmerReport.h"

void TrimmerReport::Print() const
{
  if ( m_fp ) {
    fprintf( m_fp, "Length\tCount\n" );
    for ( int i=0; i<=m_maxInputLength; i++ ) {
      fprintf( m_fp, "%d\t%d\n", i, m_histogram[i] );
    }
  }
}
TrimmerReport::TrimmerReport( FILE *fp)
  : m_count(0),
    m_maxInputLength(0),
    m_fp( fp )
{
  for ( int i=0; i<MAX_READ_SIZE; i++ ) {
    m_histogram[i] = 0;
  }
}
void TrimmerReport::Add( int trimmedLength, int originalLength )
{
  m_histogram[ trimmedLength ]++;
  if ( originalLength > m_maxInputLength ) {
    m_maxInputLength = originalLength;
  }
}

int TrimmerReport::Flag() const
{
  return (m_fp!=NULL);
}