################################################################################
##
## Copyright (c) 2007-2011 Illumina, Inc.
##
## This software is covered by the "Illumina Genome Analyzer Software
## License Agreement" and the "Illumina Source Code License Agreement",
## and certain third party copyright/licenses, and any user of this
## source file is bound by the terms therein (see accompanying files
## Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
## Illumina_Source_Code_License_Agreement.pdf and third party
## copyright/license notices).
##
## This file is part of the Consensus Assessment of Sequence And VAriation
## (CASAVA) software package.
##
## file AnalyseProjectsAux1.mk
##
## brief Partial makefile to navigate the hierarchy of projects and samples.
##
## author Come Raczy
##
################################################################################

ifeq (,$(currentProjects))
$(error Empty list of projects)
endif

project := $(word 1, $(currentProjects))

ifeq (1,$(words $(currentProjects)))
currentProjects :=
else
currentProjects := $(wordlist 2, $(words $(currentProjects)), $(currentProjects))
endif

currentSamples := $($(project)_SAMPLES)

$(project)_SAMPLE_PAIR_XML_FILES:=
$(project)_DATASET_PAIR_XML_FILES:=
include $(foreach sample, $(currentSamples), $(MAKEFILES_DIR)/AnalyseSamples.mk)

$(project)_SCORE_FILES:=
$(project)_RESCORE_FILES:=
# pick unique lanes out of all samples that belong to the project
currentLanes := $(sort $(foreach sample, $($(project)_SAMPLES), $(foreach psl, $($(project)_$(sample)_LANES), $(psl))))
include $(foreach lane, $(currentLanes),  $(MAKEFILES_DIR)/ProjectLaneSummary.mk)

include $(MAKEFILES_DIR)/ProjectSummary.mk