################################################################################
##
## Copyright (c) 2007-2011 Illumina, Inc.
##
## This software is covered by the "Illumina Genome Analyzer Software
## License Agreement" and the "Illumina Source Code License Agreement",
## and certain third party copyright/licenses, and any user of this
## source file is bound by the terms therein (see accompanying files
## Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
## Illumina_Source_Code_License_Agreement.pdf and third party
## copyright/license notices).
##
## This file is part of the Consensus Assessment of Sequence And VAriation
## (CASAVA) software package.
##
## file Pair.mk
##
## brief Partial makefile to build the pair xml files for a single lane.
##
## Also used for the custom calibration workflow.
##
## pickBestPair.pl generates several files with names that can be related
## into a single pattern rule.
##
## author Come Raczy
##
################################################################################
$(dataset)_PAIR_XML_FILES:=

include $(MAKEFILES_DIR)/PairAux1.mk

# Consolidation of the pair files for dataset
.PRECIOUS: $($(dataset)_DESTINATION_PREFIX)$(PAIR_SUFFIX)

$($(dataset)_DESTINATION_PREFIX)$(PAIR_SUFFIX): $($(dataset)_PAIR_XML_FILES)
	$(CMDPREFIX) $(CONS) --int $^ > $(SAFEPIPETARGET)

$(project)_$(sample)_DATASET_PAIR_XML_FILES += $($(dataset)_DESTINATION_PREFIX)$(PAIR_SUFFIX)