################################################################################
##
## Copyright (c) 2007-2011 Illumina, Inc.
##
## This software is covered by the "Illumina Genome Analyzer Software
## License Agreement" and the "Illumina Source Code License Agreement",
## and certain third party copyright/licenses, and any user of this
## source file is bound by the terms therein (see accompanying files
## Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
## Illumina_Source_Code_License_Agreement.pdf and third party
## copyright/license notices).
##
## This file is part of the Consensus Assessment of Sequence And VAriation
## (CASAVA) software package.
##
## file ProjectLaneSummary.mk
##
## \brief Partial makefile to build the Summary.{xml,xsl,htm} file for the single lane of 
##        data that belongs to the same project. 
##
## This is required to reduce the xml merge comman line length for high-plexity datasets
##
## author Roman Petrovski
##
################################################################################

ifeq (,$(currentLanes))
$(error ERROR: project $(project): sample $(sample): empty list of lanes)
endif

lane := $(word 1, $(currentLanes))

ifeq (1,$(words $(currentLanes)))
currentLanes :=
else
currentLanes := $(wordlist 2, $(words $(currentLanes)), $(currentLanes))
endif

$($(project)_SUMMARY_DIR)/s_$(lane)_$(SCORE_XML): lane:=$(lane)
$($(project)_SUMMARY_DIR)/s_$(lane)_$(SCORE_XML): \
  $($(project)_SUMMARY_DIR)/.sentinel \
  $($(project)_$(lane)_SCORE_FILES)
	$(CMDPREFIX) $(ECHO) '<?xml version="1.0"?><Stats/>' $(foreach part_summ, $($(project)_$(lane)_SCORE_FILES), \
		| $(XSLTPROC) --stringparam with $(part_summ) $(DATA_DIR)/MergeXmlDocuments.xsl -) \
	> $(SAFEPIPETARGET)

$($(project)_SUMMARY_DIR)/s_$(lane)_$(RESCORE_XML): lane:=$(lane)
$($(project)_SUMMARY_DIR)/s_$(lane)_$(RESCORE_XML): \
  $($(project)_SUMMARY_DIR)/.sentinel \
  $($(project)_$(lane)_RESCORE_FILES)
	$(CMDPREFIX) $(ECHO) '<?xml version="1.0"?><Stats/>' $(foreach part_summ, $($(project)_$(lane)_RESCORE_FILES), \
		| $(XSLTPROC) --stringparam with $(part_summ) $(DATA_DIR)/MergeXmlDocuments.xsl -) \
	> $(SAFEPIPETARGET)

$(project)_SCORE_FILES:=$($(project)_SCORE_FILES) $($(project)_SUMMARY_DIR)/s_$(lane)_$(SCORE_XML)
$(project)_RESCORE_FILES:=$($(project)_RESCORE_FILES) $($(project)_SUMMARY_DIR)/s_$(lane)_$(RESCORE_XML)