################################################################################
##
## Copyright (c) 2007-2011 Illumina, Inc.
##
## This software is covered by the "Illumina Genome Analyzer Software
## License Agreement" and the "Illumina Source Code License Agreement",
## and certain third party copyright/licenses, and any user of this
## source file is bound by the terms therein (see accompanying files
## Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
## Illumina_Source_Code_License_Agreement.pdf and third party
## copyright/license notices).
##
## This file is part of the Consensus Assessment of Sequence And VAriation
## (CASAVA) software package.
##
## file ProjectThumbnails.mk
##
## brief Partial makefile to build the Error.htm file for the whole flow cell.
##
## Also generates FullError.htm, Perfect.htm and FullPerfect.htm.
##
## author Roman Petrovski
##
################################################################################
$(project)_SUMMARY_$(PEC_THUMB)_TARGET:=
$(project)_SUMMARY_$(MISMATCH_THUMB)_TARGET:=

ifneq (,$($(project)_ERROR_GRAPH_TARGETS))

.PRECIOUS: $($(project)_SUMMARY_DIR)/Full$(MISMATCH_THUMB) $($(project)_SUMMARY_DIR)/Full$(PEC_THUMB)

$($(project)_SUMMARY_DIR)/Full$(PEC_THUMB): project:=$(project)
$($(project)_SUMMARY_DIR)/Full$(PEC_THUMB): \
  $($(project)_SUMMARY_DIR)/.sentinel $($(project)_ERROR_GRAPH_TARGETS) config.xml $(TEMP_DIR)/SampleSheet.xml
	$(CMDPREFIX) $(XSLTPROC) \
	--stringparam PROJECT_PATH_PARAM $(CURDIR)/$($(project)_SUMMARY_DIR) \
	--stringparam PROJECT_NAME_PARAM $(project) \
	--stringparam SAMPLE_SHEET_PATH_PARAM $(CURDIR)/$(TEMP_DIR)/SampleSheet.xml \
	--stringparam PROJECT_PADDED_TILES_PARAM '$($(project)_PADDED_TILES)' \
	$(DATA_DIR)/PerfectThumbnails.xsl config.xml > $(SAFEPIPETARGET)

$($(project)_SUMMARY_DIR)/Full$(MISMATCH_THUMB): project:=$(project)
$($(project)_SUMMARY_DIR)/Full$(MISMATCH_THUMB): \
  $($(project)_SUMMARY_DIR)/.sentinel $($(project)_ERROR_GRAPH_TARGETS) config.xml $(TEMP_DIR)/SampleSheet.xml
	$(CMDPREFIX) $(XSLTPROC) \
	--stringparam PROJECT_PATH_PARAM $(CURDIR)/$($(project)_SUMMARY_DIR) \
	--stringparam PROJECT_NAME_PARAM $(project) \
	--stringparam SAMPLE_SHEET_PATH_PARAM $(CURDIR)/$(TEMP_DIR)/SampleSheet.xml \
	--stringparam PROJECT_PADDED_TILES_PARAM '$($(project)_PADDED_TILES)' \
	$(DATA_DIR)/MismatchThumbnails.xsl config.xml > $(SAFEPIPETARGET)

# absolute paths are required for xslt transformation on these targets
$(project)_SUMMARY_$(PEC_THUMB)_TARGET := $($(project)_SUMMARY_DIR)/Full$(PEC_THUMB)
$(project)_SUMMARY_$(MISMATCH_THUMB)_TARGET := $($(project)_SUMMARY_DIR)/Full$(MISMATCH_THUMB)
endif